User:Yun-Peng Xu: Difference between revisions

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==Contact Info==
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Yun-Peng Xu (an artistic interpretation)]]
[[Image:Photo_Peng.jpg|right|thumb]]


*Yun-Peng Xu
*Peng Xu
*[http://biotech.rpi.edu/ Center for Biotechnology and Interdisciplinary Studies]
*Chemical and Biological Engieering, Rensselaer Polytechnic Institute
*Chemical and Biological Engieering, Rensselaer Polytechnic Institute
*Address 1
*110 Eighth Street
*Address 2
*Troy, NY 12180, USA.  
*City, State, Country etc.  
*[[Special:Emailuser/Peng Daniel Xu|pxu999 at gmail dot com]]
*[[Special:Emailuser/Yun-Peng Xu|Email me through OpenWetWare]]


I work in the [[Your Lab]] at XYZ University.  I learned about [[OpenWetWare]] from Google search, and I've joined because Share ideas, promote academic communication.
I work in the [http://koffasresearch.wordpress.com/lab-members/ Koffas group] at [http://www.rpi.edu/ Rensselaer Polytechnic Institute]. Before we moved to RPI at February 2011, I have studied at the [http://www.buffalo.edu/ State University of New York at Buffalo] for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in ''E. coli''.


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* Year, PhD, Institute
* May, 2013 (expected),PhD in Chemical Engineering, [http://www.rpi.edu/ Rensselaer Polytechnic Institute]
* Year, MS, Institute
* 2006, MS in Biochemical Engineering, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)
* Year, BS, Institute
* 2003, BS in Biotechnology, [http://www.jiangnan.edu.cn/ Jiangnan University] (Formerly Southern Yangtze University)


==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
# Interest 1
# Metabolic engineering
# Interest 2
# Synthetic biology
# Interest 3
# Natural Products/Biofuels
# Biochemical/Bioprocess engineering


==Publications==
==Publications==
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<biblio>
[http://www.researcherid.com/rid/C-6440-2011 My research ID profile]
#Paper1 pmid=6947258
# Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) [http://dx.doi.org/10.1038/ncomms2425 Modular optimization of multi-gene pathway for fatty acids production in ''E. coli'']. Nature Communications, 4: 1409.
#Paper2 pmid=13718526
# Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) [http://dx.doi.org/10.1016/j.ces.2012.10.009 Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework]. Chemical Engineering Science, Accepted manuscript, In press
// leave a comment about a paper here
# Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology.
#Book1 isbn=0879697164
# Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) [http://dx.doi.org/10.1016/j.copbio.2012.08.010 Engineering plant metabolism into microbes: from systems biology to synthetic biology]. Current Opinion in Biotechnology, 24(2), pp xxx-yyy. [http://koffasresearch.files.wordpress.com/2012/09/2012-08-010.pdf PDF]
</biblio>
# Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) [http://dx.doi.org/doi:10.1021/sb300016b ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli]. ACS Synthetic Biology,1 (7), pp 256–266.[http://koffasresearch.files.wordpress.com/2012/07/epathbrick.pdf PDF]
# Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) [http://dx.doi.org/doi:10.1016/j.ymben.2011.06.008 Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA]. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. [http://koffasresearch.files.wordpress.com/2012/07/malonyl-coa.pdf PDF]
# Xu, Peng; Koffas, Mattheos A. G. (2010) [http://dx.doi.org/doi:10.4155/bfs.10.13 Metabolic engineering of Escherichia coli for biofuel production], Biofuels, Volume: 1 Issue: 3 Pages: 493-504. [http://koffasresearch.files.wordpress.com/2012/07/biofuels.pdf PDF]
# Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) [http://dx.doi.org/doi:10.1007/s12257-010-0345-z Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor],Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. [https://docs.google.com/open?id=0B4wZIrGHL-wBZTU5YTQ1NDQtMzBlMy00NmRjLThlNjktMTdiNzY2OTY4YzM2 PDF] 
# Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) [http://dx.doi.org/doi:10.1016/j.enzmictec.2007.10.016 Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media],  Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. [https://docs.google.com/viewer?a=v&pid=explorer&chrome=true&srcid=0B4wZIrGHL-wBNmZhZTI1MDYtNzRkNS00ODczLTkwNTktZjM0ZmQxMmFhODE2&hl=en_US PDF]
# Zhang, TX; Xu, P; Sun, J; et al. (2009) [http://dx.doi.org/doi:10.1094/ASBCJ-2008-1212-01 Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley], Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37


==Useful links==
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[Help|OpenWetWare help pages]]
*[[Help|OpenWetWare help pages]]

Revision as of 09:51, 29 January 2013

Contact Info

I work in the Koffas group at Rensselaer Polytechnic Institute. Before we moved to RPI at February 2011, I have studied at the State University of New York at Buffalo for two and a half years. My PhD projects involve developing synthetic biology tools to engineer the microbial synthesis of natural products and fuel molecules in E. coli.

Education

Research interests

  1. Metabolic engineering
  2. Synthetic biology
  3. Natural Products/Biofuels
  4. Biochemical/Bioprocess engineering

Publications

My research ID profile

  1. Xu P, Gu Q; Wang W, Wong L, Bower A, Collins CH and Koffas MA. (2013) Modular optimization of multi-gene pathway for fatty acids production in E. coli. Nature Communications, 4: 1409.
  2. Bhan N, Xu P, Khalidi O and Koffas MAG. (2013) Redirecting carbon flux into Malonyl-CoA to improve Resveratrol titers: Proof of concept for genetic interventions predicted by OptForce computational framework. Chemical Engineering Science, Accepted manuscript, In press
  3. Xu P and Koffas MA. (2013) Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Book chapter in Methods in Molecular Biology: Synthetic Biology.
  4. Xu, Peng; Bhan, Namita; Koffas, Mattheos A.G. (2013) Engineering plant metabolism into microbes: from systems biology to synthetic biology. Current Opinion in Biotechnology, 24(2), pp xxx-yyy. PDF
  5. Xu, Peng; Vansiri, Amerin; Bhan, Namita; Koffas, Mattheos A.G. (2012) ePathBrick: A synthetic biology platform for engineering metabolic pathways in E. coli. ACS Synthetic Biology,1 (7), pp 256–266.PDF
  6. Xu, Peng; Ranganathan, Sridhar; Fowler, Zachary; Maranas, Costas D.; Koffas, Mattheos A.G. (2011) Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metabolic Engineering, Volume: 13 Issue: 5 Pages: 578-587. PDF
  7. Xu, Peng; Koffas, Mattheos A. G. (2010) Metabolic engineering of Escherichia coli for biofuel production, Biofuels, Volume: 1 Issue: 3 Pages: 493-504. PDF
  8. Zhang, Liang; Ding, Zhongyang; Xu, Peng; et al. (2011) Methyl lucidenate F isolated from the ethanol-soluble-acidic components of Ganoderma lucidum is a novel tyrosinase inhibitor,Biotechnology and Bioprocess Engineering, Volume: 16 Issue: 3 Pages: 457-461. PDF
  9. Xu, Peng; Ding, ZY; Qian, Z; et al. (2008) Improved production of mycelial biomass and ganoderic acid by submerged culture of Ganoderma lucidum SB97 using complex media, Enzyme and Microbial Technology, Volume: 42 Issue: 4 Pages: 325-331. PDF
  10. Zhang, TX; Xu, P; Sun, J; et al. (2009) Identification of Biological Wort Turbidity Caused by Microbial Contamination of Gairdner Barley, Journal of the American Society of Brewing Chemists, Volume: 67 Issue: 1 Pages: 33-37

Useful links

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