User:Yiannis Kaznessis: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
|||
| Line 1: | Line 1: | ||
<!-- Delete this entire line as part of your first edit of your user page --> {{New user}} | <!-- Delete this entire line as part of your first edit of your user page --> {{New user}} | ||
---- | |||
==Contact Info== | ==Contact Info== | ||
[[Image:OWWEmblem.png|thumb|right|Yiannis Kaznessis (an artistic interpretation)]] | [[Image:OWWEmblem.png|thumb|right|Yiannis Kaznessis (an artistic interpretation)]] | ||
*Yiannis Kaznessis | *Yiannis Kaznessis | ||
*Department of Chemical Engineering and Materials Science | |||
*University of Minnesota | *University of Minnesota | ||
* | *421 Washington Ave SE | ||
* | *Minneapolis, MN 55455, USA | ||
*[[Special:Emailuser/Yiannis Kaznessis|Email me through OpenWetWare]] | *[[Special:Emailuser/Yiannis Kaznessis|Email me through OpenWetWare]] | ||
In my group we are interested in computational synthetic biology. We are developing the Synthetic Biology Software Suite, a publicly available software suite that assists in rationally designing synthetic gene regulatory networks. | |||
In recent work, we developed multiscale models of gene regulatory networks with synthetic biology applications. Simulations have been used that model all biomolecular interactions in transcription, translation, regulation, and induction of gene regulatory networks, guiding the design of synthetic systems. <ref> Y. N. Kaznessis, (2007) "Models for Synthetic Biology", BMC Systems Biology, 2007, 1:47 doi:10.1186/1752-0509-1-47 [http://www.biomedcentral.com/1752-0509/1/47]. </ref> | |||
<ref> Sotiropoulos V, Kaznessis YN. Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes. BMC Syst Biol. 2007 Jan 9;1:7.</ref> | |||
<ref> Salis H, Kaznessis YN. Computer-aided design of modular protein devices: Boolean AND gene activation. Phys Biol. 2006 Dec 22;3(4):295-310.</ref> | |||
<ref> Tomshine J, Kaznessis YN. Optimization of a stochastically simulated gene network model via simulated annealing. Biophys J. 2006 Nov 1;91(9):3196-205.</ref> | |||
==Education== | ==Education== | ||
Revision as of 19:26, 7 July 2008
I am a new member of OpenWetWare!
Contact Info
- Yiannis Kaznessis
- Department of Chemical Engineering and Materials Science
- University of Minnesota
- 421 Washington Ave SE
- Minneapolis, MN 55455, USA
- Email me through OpenWetWare
In my group we are interested in computational synthetic biology. We are developing the Synthetic Biology Software Suite, a publicly available software suite that assists in rationally designing synthetic gene regulatory networks.
In recent work, we developed multiscale models of gene regulatory networks with synthetic biology applications. Simulations have been used that model all biomolecular interactions in transcription, translation, regulation, and induction of gene regulatory networks, guiding the design of synthetic systems. [1] [2] [3] [4]
Education
- Year, PhD, Institute
- Year, MS, Institute
- Year, BS, Institute
Research interests
- Interest 1
- Interest 2
- Interest 3
Publications
- Goldbeter A and Koshland DE Jr. An amplified sensitivity arising from covalent modification in biological systems. Proc Natl Acad Sci U S A. 1981 Nov;78(11):6840-4. DOI:10.1073/pnas.78.11.6840 |
- JACOB F and MONOD J. Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol. 1961 Jun;3:318-56. DOI:10.1016/s0022-2836(61)80072-7 |
leave a comment about a paper here
- ISBN:0879697164
Useful links
- ↑ Y. N. Kaznessis, (2007) "Models for Synthetic Biology", BMC Systems Biology, 2007, 1:47 doi:10.1186/1752-0509-1-47 [1].
- ↑ Sotiropoulos V, Kaznessis YN. Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes. BMC Syst Biol. 2007 Jan 9;1:7.
- ↑ Salis H, Kaznessis YN. Computer-aided design of modular protein devices: Boolean AND gene activation. Phys Biol. 2006 Dec 22;3(4):295-310.
- ↑ Tomshine J, Kaznessis YN. Optimization of a stochastically simulated gene network model via simulated annealing. Biophys J. 2006 Nov 1;91(9):3196-205.
