User:Vincent Rouilly/Data Exchange Standards For Synthetic Biology

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Revision as of 09:32, 5 January 2010

Data Exchange Standards For Synthetic Biology

For many years, the Molecular Biology and Systems Biology communities are working on data exchange standards to stimulate communication and scientific discoveries. The Synthetic Biology community might find useful to evaluate and re-use these standards when applicable.

Vincent 08:32, 5 January 2010 (EST):Feel free to add links, it is a work in progress.

Experimental measurements

Fluoresent assays

  • Fluorescent microscopy
  • Flow cytometry
  • Microarrays

Biological Entity Description

  • DNA sequences
    • FASTA
    • GenBank
    • DAS

Computational Biology

  • SBML
  • CellML
  • MIRIAM

Reviews and Publications

  1. Strömbäck L, Hall D, and Lambrix P. . pmid:17370264. PubMed HubMed [1]
  2. Strömbäck L, Jakoniene V, Tan H, and Lambrix P. . pmid:17132622. PubMed HubMed [2]
  3. Schilling M, Pfeifer AC, Bohl S, and Klingmüller U. . pmid:18617004. PubMed HubMed [3]
  4. Martens L, Palazzi LM, and Hermjakob H. . pmid:18592186. PubMed HubMed [4]
  5. Orchard S and Kerrien S. . pmid:20013380. PubMed HubMed [5]
  6. Orchard S, Hoogland C, Bairoch A, Eisenacher M, Kraus HJ, and Binz PA. . pmid:19132688. PubMed HubMed [6]
All Medline abstracts: PubMed HubMed
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