User:Vincent Rouilly: Difference between revisions

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Revision as of 04:21, 12 July 2009

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Vincent Rouilly's Profile


Imperial College London
South Kensington SW7 2AZ
London, UK

email: vincent.rouilly (at) imperial (dot) ac (dot) uk

join my LinkedIn Network

  • Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
  • Research themes:
    • Synthetic Biology: Part Characterisation and Standardisation
    • Computational Biology: Stochastic Gene Expression, Rational Nucleic Acid Probe design.
    • Laboratory Automation

Education and Past Work Experiences

  • PhD,Department of Bioengineering, Imperial College London.
  • GE Medical Systems, Paris, Software R&D Engineer.
  • Visiospace, Paris, Software R&D Engineer.
  • M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).

Affiliations

Synthetic Biology in the making

(or how to keep track of what is happening in the Synthetic Biology community)

Research Interests

  • Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
  • Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
  • Laboratory Information System.
  • Laboratory Automation

My Open Source Hardware Projects to support Synthetic Biology

Current Projects

  • Recombineering for Synthetic Biology
    • Homology recombination-based promoter screening construct.
    • Homology recombination-based rolling device integration.
  • Droplet-based Microfluidics for Synthetic Biology
  • Open Source Hardware for Synthetic Biology
    • Arduino-based Peltier controller
    • Colony counting / picking system

Online shared resources

Teaching Experience

OWW Contributions

Other:

Interesting links found on OWW

Useful Open Source Softwares

Cool Open Source Hardware Projects

Recommended Books

Do-It-Yourself / Developing World Technologies for Biological Engineering

General

DNA manipulation

Measuremements and Characterization

Data Acquisition, Control and Lab Automation

OWW ideas (random)

building a stronger community

  • get people to define on their User page their area(s) of interest using 'wiki-categories' (could help to find collaborators).
  • if people defines their area of interest using references, would be interesting to use that information to match people's profiles.

support to find relevant info

  • 'contextual' browsing ('hacking' google-ads-type-of-service to show other relevant wiki-pages or wiki-users on the side of a wiki page ... instead of ads).
  • set essential keywords pages. 'Experts', in a given field, would recommend a set of keywords to help new comers to google more efficiently.
  • setting-up a calendar with info about conferences, workshops, submission deadlines ...

adding features

  • implementing java applets which are enable to read/write an xml-like format into the wiki:
    • image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
    • graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)

Project

Here is an overview of the modelling framework I am working on:


Who is visiting my page?

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