User:Vincent Rouilly: Difference between revisions

Revision as of 04:46, 23 January 2008

Vincent Rouilly, PhD Candidate

Department of Bioengineering
Imperial College London
South Kensington SW7 2AZ
London, UK

email: vincent.rouilly03 (at) imperial.ac.uk

Join us at BioSysBio-2008@ImperialCollege (20-22 April 2008)

BioSysBio 2008 is primarily aimed at graduate students, post-docs and junior faculty working in biology and biotechnology.

The IET BioSysBio Organising Committee welcomes contributions in the fields of Synthetic Biology, Systems Biology and Bioinformatics. These may range from research concepts and ideas to technical issues and industrial applications. You can submit your paper here.

Education and Past Work Experiences

PhD candidate at Imperial College London
- Writing-up PhD thesis: "An Engineering Approach To The Modeling Of Genetic Circuits"

GE Medical Systems, Paris, Software R&D Engineer.
Visiospace, Paris, Software R&D Engineer.
M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).

Research Interests

Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
Laboratory Information System.
Lab Automation

Teaching Experience

Synthetic Biology Course (Spring 2008): Instructor @ Imperial College
Synthetic Biology Computer Modelling Practicals (Spring 2008): Instructor @ Imperial College.
iGEM instructor:
- iGEM 2006: "Engineering a Molecular Predation Oscillator", 1st Runner-Up, Best Documentation, Best Characterisation.
- iGEM 2007: "Cell-Free Infection Detector", Gold Medal.
Co-Supervisor master project (summer 2007): "Sensitivity analysis applied to genetic circuit induction protocols".
Co-Supervisor UROP project (summer 2007): "Building modular biobricks models implemented with CellML"

OWW Contributions

Other:

IGEM:IMPERIAL/2006/Created_Pages

Interesting links found on OWW

Recommended Books

Do-It-Yourself / Developing World Technologies for Biological Engineering

General

DNA manipulation

Measuremements and Characterization

Data Acquisition, Control and Lab Automation

OWW ideas (random)

building a stronger community

get people to define on their User page their area(s) of interest using 'wiki-categories' (could help to find collaborators).
if people defines their area of interest using references, would be interesting to use that information to match people's profiles.

support to find relevant info

'contextual' browsing ('hacking' google-ads-type-of-service to show other relevant wiki-pages or wiki-users on the side of a wiki page ... instead of ads).
set essential keywords pages. 'Experts', in a given field, would recommend a set of keywords to help new comers to google more efficiently.
setting-up a calendar with info about conferences, workshops, submission deadlines ...

adding features

implementing java applets which are enable to read/write an xml-like format into the wiki:
- image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
- graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)

Project

Here is an overview of the modelling framework I am working on:

Who is visiting my page?

<script type="text/javascript" language="javascript"> var sc_project=1775726; var sc_invisible=0; var sc_partition=16; var sc_security="e9fd94f4"; </script>

</html>

Sandbox

@@ Line 61: / Line 61: @@
 * [[User:Vincent_Rouilly/Hands_On_BioBrick_Activity | Hands on BioBrick Activity for a science fair]]
 * [[OpenWetWare:Equipment/Laboratory_Automation | Lab Automation Review]]
+* [[Computational_Biology | Computational Biology]]
 * [[Computational_Biology/Gene_Expression_modeling/Stochastic_Approach | Stochastic Gene Expression]]
 * [[Registry of Standard Biological Models| Registry of Standard Models]]