User:Vincent Rouilly

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(My Open Source Hardware Projects to support Synthetic Biology)
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Imperial College London<br>
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email: vincent.rouilly [-at-] gmail [-dot-] com
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South Kensington
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SW7 2AZ<br>
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London, UK<br>
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email: vincent.rouilly (at) imperial (dot) ac (dot) uk
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Paris, France.
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
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* '''Research Associate''', Institute of Systems and Synthetic Biology, Imperial College London
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== Work Experiences ==
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* '''Research themes''':
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* Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
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** Synthetic Biology: Part Characterisation and Standardisation
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* Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
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** Computational Biology: Stochastic Gene Expression, Rational Nucleic Acid Probe design.
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* Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
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** Laboratory Automation
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* GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
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== Education and Past Work Experiences==
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* PhD,Department of Bioengineering, Imperial College London.
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* GE Medical Systems, Paris, Software R&D Engineer.
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* Visiospace, Paris, Software R&D Engineer.
* Visiospace, Paris, Software R&D Engineer.
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== Education ==
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* PhD, Computational Biology, Department of Bioengineering, Imperial College London.
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
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(or how to keep track of what is happening in the Synthetic Biology community)
(or how to keep track of what is happening in the Synthetic Biology community)
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<!--* '''TATAvox Blog''': [http://tatavox.wordpress.com link] -->
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* '''Personal Tweeter Feed''' : [http://twitter.com/vrouilly link]
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* '''Tweeter Feed on SynBioNews''' : [http://twitter.com/SynBioNews link]
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* '''Facebook group on synthetic biology''': [http://www.facebook.com/#!/group.php?gid=2204701004&ref=mf link]
* '''SynBio Blog Aggregator''':[http://feeds.feedburner.com/WhatAboutSyntheticBiology RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2712861&amp;loc=en_US Email Subscription]
* '''SynBio Blog Aggregator''':[http://feeds.feedburner.com/WhatAboutSyntheticBiology RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2712861&amp;loc=en_US Email Subscription]
* '''CiteULike SynBio Literature''':[http://feeds.feedburner.com/Synthetic_biology_literature RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2717166&amp;loc=en_US Email Subscription].
* '''CiteULike SynBio Literature''':[http://feeds.feedburner.com/Synthetic_biology_literature RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2717166&amp;loc=en_US Email Subscription].
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* [[User:Vincent Rouilly/Distributed Annotation System (DAS) for DNA Part Registries | DAS server on Google App Engine for DNA parts]]
* [[User:Vincent Rouilly/Distributed Annotation System (DAS) for DNA Part Registries | DAS server on Google App Engine for DNA parts]]
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==Current Projects==
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==Past Projects==
* '''Recombineering for Synthetic Biology'''
* '''Recombineering for Synthetic Biology'''
** Homology recombination-based promoter screening construct.
** Homology recombination-based promoter screening construct.
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* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
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* [http://tataaavox.wordpress.com/ blog]
==Teaching Experience ==
==Teaching Experience ==
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* [[Imperial_College/Courses/Fall2009/Synthetic_Biology_(MRes_class)| Synthetic Biology Course (Fall 2009, MRes)]]: Lecturer @ Imperial College
* [[Imperial_College/Courses/Fall2008/Synthetic_Biology_(MRes_class)| Synthetic Biology Course (Fall 2008, MRes)]]: Lecturer @ Imperial College
* [[Imperial_College/Courses/Fall2008/Synthetic_Biology_(MRes_class)| Synthetic Biology Course (Fall 2008, MRes)]]: Lecturer @ Imperial College
* [[Imperial_College/Courses/Spring2008/Synthetic Biology| Synthetic Biology Course (Spring 2008)]]: Lecturer @ Imperial College
* [[Imperial_College/Courses/Spring2008/Synthetic Biology| Synthetic Biology Course (Spring 2008)]]: Lecturer @ Imperial College
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== OWW Contributions ==
== OWW Contributions ==
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* [[User:Vincent_Rouilly/Data_Exchange_Standards_For_Synthetic_Biology | Data_Exchange_Standards_For_Synthetic_Biology]]
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* [[User:Vincent_Rouilly/Computational_Biology_With_R | Computational Biology with R]]
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* [[User:Vincent_Rouilly/Synthetic_Biology_Community_Pointers | SynBio Community Pointers]]
* [[Citizen Science/Open Spectrophotometer Project | Open Spectrophotometer Project]]
* [[Citizen Science/Open Spectrophotometer Project | Open Spectrophotometer Project]]
* Steering committee member and outreach co-chair.
* Steering committee member and outreach co-chair.
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* [http://www.openservo.com/ OpenServo], servo motor.
* [http://www.openservo.com/ OpenServo], servo motor.
* [http://www.linuxelectrons.com/features/howto/consolidated-hacking-guide-linksys-wrt54gl Linksys WRT54GL], router.
* [http://www.linuxelectrons.com/features/howto/consolidated-hacking-guide-linksys-wrt54gl Linksys WRT54GL], router.
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* [http://www.buildlog.net/blog/2011/02/buildlog-net-2-x-laser/ Laser Cutter 2.x]
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* from KickStarter:
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** [http://www.kickstarter.com/projects/93832939/makerslide-open-source-linear-bearing-system MakerSlide Open Source Linear Bearing System]
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** [http://www.kickstarter.com/projects/nortd/lasersaur-open-source-laser-cutter-0?ref=category Laseraur open source laser cutter]
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** [http://www.kickstarter.com/projects/701662757/makerbeam-an-open-source-building-kit MakerBeam an Open Source building kit]
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** [http://www.kickstarter.com/projects/nicholasclewis/inkshield-an-open-source-inkjet-shield-for-arduino?ref=category inkshield for Arduino]
==Recommended Books==
==Recommended Books==
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* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
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<!--
== OWW ideas (random) ==
== OWW ideas (random) ==
=== building a stronger community ===
=== building a stronger community ===
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**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
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== Project ==
== Project ==
Here is an overview of the modelling framework I am working on:
Here is an overview of the modelling framework I am working on:
[[Image:MSMrouilly2.png]]
[[Image:MSMrouilly2.png]]
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== Delicio.us Tags ==
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<html>
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<body>
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<script type="text/javascript" src="http://feeds.www.delicious.com/v2.1/js/tags/Manosquin?title=Vincent's%20Tags&icon&count=50&sort=freq&flow=cloud&totals&name&showadd&color=73adff-3274d0&size=12-35"></script>
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</body>
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</html>
==Who is visiting my page?==
==Who is visiting my page?==

Current revision


Vincent Rouilly's Profile


email: vincent.rouilly [-at-] gmail [-dot-] com

Paris, France.

join my LinkedIn Network

Work Experiences

  • Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
  • Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
  • Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
  • GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
  • Visiospace, Paris, Software R&D Engineer.

Education

  • PhD, Computational Biology, Department of Bioengineering, Imperial College London.
  • M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).

Affiliations

Synthetic Biology in the making

(or how to keep track of what is happening in the Synthetic Biology community)

Research Interests

  • Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
  • Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
  • Laboratory Information System.
  • Laboratory Automation

My Open Source Hardware/Software Projects to support Synthetic Biology

Past Projects

  • Recombineering for Synthetic Biology
    • Homology recombination-based promoter screening construct.
    • Homology recombination-based rolling device integration.
  • Droplet-based Microfluidics for Synthetic Biology
  • Open Source Hardware for Synthetic Biology
    • Arduino-based Peltier controller
    • Colony counting / picking system

Online shared resources

Teaching Experience

OWW Contributions

Other:

Interesting links found on OWW

Useful Open Source Softwares

Cool Open Source Hardware Projects

Recommended Books

Do-It-Yourself / Developing World Technologies for Biological Engineering

General

DNA manipulation

Measuremements and Characterization

Data Acquisition, Control and Lab Automation

Project

Here is an overview of the modelling framework I am working on: Image:MSMrouilly2.png

Delicio.us Tags

Who is visiting my page?

Locations of visitors to this page

Sandbox

Personal tools