User:Vincent Rouilly

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
m (OWW Contributions)
Current revision (13:36, 18 November 2012) (view source)
m (Online shared resources)
 
(20 intermediate revisions not shown.)
Line 2: Line 2:
<head> <meta name="verify-v1" content="aHcQXUFRtTMwxSsDdDDIE5T4J22lXBInE/l774X1wFA=" /> </head>
<head> <meta name="verify-v1" content="aHcQXUFRtTMwxSsDdDDIE5T4J22lXBInE/l774X1wFA=" /> </head>
</html>
</html>
 +
 +
 +
<div class=noprint> </div>
 +
<div style="padding: 10px; width: 75%; color: #FFFFFF; background-color: #2171B7">
 +
<center><font face="trebuchet ms" style="color:#FFFFFF" size="5">'''Vincent Rouilly's Profile'''</font><br>
 +
</center>
 +
</div>
 +
 +
<div style="padding: 10px; width: 75%; border: 5px solid #2171B7;">
__NOTOC__
__NOTOC__
Line 7: Line 16:
{|cellspacing="1" cellpadding="10" style="background:#ffffff; width: 100%;"
{|cellspacing="1" cellpadding="10" style="background:#ffffff; width: 100%;"
|-valign="top"
|-valign="top"
-
|style="background:#efefef" align="right"|
+
|style="background:#ADD8E6" align="right"|
-
 
+
-
<font size="4">'''Vincent Rouilly'''</font size>
+
<font size="2">
<font size="2">
-
Imperial College London<br>
+
email: vincent.rouilly [-at-] gmail [-dot-] com
-
South Kensington
+
-
SW7 2AZ<br>
+
-
London, UK<br>
+
-
email: vincent.rouilly (at) imperial (dot) ac (dot) uk
+
Paris, France.
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
Line 23: Line 27:
|}
|}
-
== Education and Past Work Experiences==
+
== Work Experiences ==
-
* PhD,Department of Bioengineering, Imperial College London.
+
* Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
-
* GE Medical Systems, Paris, Software R&D Engineer.
+
* Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
 +
* Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
 +
* GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
* Visiospace, Paris, Software R&D Engineer.
* Visiospace, Paris, Software R&D Engineer.
 +
 +
== Education ==
 +
* PhD, Computational Biology, Department of Bioengineering, Imperial College London.
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
Line 36: Line 45:
* [http://conferences.theiet.org/biosysbio/ BioSysBio (program committee)]
* [http://conferences.theiet.org/biosysbio/ BioSysBio (program committee)]
* [http://www.rsc.org/ Royal Society of Chemistry (member)]
* [http://www.rsc.org/ Royal Society of Chemistry (member)]
 +
 +
==Synthetic Biology in the making==
 +
(or how to keep track of what is happening in the Synthetic Biology community)
 +
 +
<!--* '''TATAvox Blog''': [http://tatavox.wordpress.com link] -->
 +
* '''Personal Tweeter Feed''' : [http://twitter.com/vrouilly link]
 +
* '''Tweeter Feed on SynBioNews''' : [http://twitter.com/SynBioNews link]
 +
* '''Facebook group on synthetic biology''': [http://www.facebook.com/#!/group.php?gid=2204701004&ref=mf link]
 +
* '''SynBio Blog Aggregator''':[http://feeds.feedburner.com/WhatAboutSyntheticBiology RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2712861&amp;loc=en_US Email Subscription]
 +
* '''CiteULike SynBio Literature''':[http://feeds.feedburner.com/Synthetic_biology_literature RSS Feed], [http://www.feedburner.com/fb/a/emailverifySubmit?feedId=2717166&amp;loc=en_US Email Subscription].
== Research Interests ==
== Research Interests ==
Line 43: Line 62:
* Laboratory Automation
* Laboratory Automation
 +
== My Open Source Hardware/Software Projects to support Synthetic Biology==
 +
* [[Citizen_Science/Open_Fluorometer_Project | Open Fluorometer]]
 +
* [[Citizen_Science/Open_Colony_Counter_Project | Open Colony Counter]]
 +
* [[Citizen_Science/Open_Spectrophotometer_Project | Open Spectrophotomoter]]
 +
* [[User:Vincent Rouilly/XYZ_Table_Project | XYZ Table Project]] from [http://www.garagefab.cc/contraptor Contraptor] DIY Plotter Kit.
 +
* [[User:Vincent Rouilly/Distributed Annotation System (DAS) for DNA Part Registries | DAS server on Google App Engine for DNA parts]]
-
==Current Projects==
+
==Past Projects==
* '''Recombineering for Synthetic Biology'''
* '''Recombineering for Synthetic Biology'''
** Homology recombination-based promoter screening construct.
** Homology recombination-based promoter screening construct.
Line 56: Line 81:
* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
 +
* [http://tataaavox.wordpress.com/ blog]
==Teaching Experience ==
==Teaching Experience ==
-
* [[Imperial_College/Courses/Spring2008/Synthetic Biology| Synthetic Biology Course (Spring 2008)]]: Instructor @ Imperial College
+
* [[Imperial_College/Courses/Fall2009/Synthetic_Biology_(MRes_class)| Synthetic Biology Course (Fall 2009, MRes)]]: Lecturer @ Imperial College
-
* [[ Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals| Synthetic Biology Computer Modelling Practicals (Spring 2008)]]: Instructor @ Imperial College.
+
* [[Imperial_College/Courses/Fall2008/Synthetic_Biology_(MRes_class)| Synthetic Biology Course (Fall 2008, MRes)]]: Lecturer @ Imperial College
 +
* [[Imperial_College/Courses/Spring2008/Synthetic Biology| Synthetic Biology Course (Spring 2008)]]: Lecturer @ Imperial College
 +
* [[ Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals| Synthetic Biology Computer Modelling Practicals (Spring 2008)]]: Lecturer @ Imperial College.
* '''[http://www.igem.org iGEM] instructor''':
* '''[http://www.igem.org iGEM] instructor''':
** [[IGEM:IMPERIAL/2006|iGEM 2006]]: "Engineering a Molecular Predation Oscillator", 1st Runner-Up, Best Documentation, Best Characterisation.
** [[IGEM:IMPERIAL/2006|iGEM 2006]]: "Engineering a Molecular Predation Oscillator", 1st Runner-Up, Best Documentation, Best Characterisation.
** [[IGEM:IMPERIAL/2007|iGEM 2007]]: "Cell-Free Infection Detector", Gold Medal.
** [[IGEM:IMPERIAL/2007|iGEM 2007]]: "Cell-Free Infection Detector", Gold Medal.
 +
** [[IGEM:IMPERIAL/2008|iGEM 2008]]: "BioFabricator".
* Co-Supervisor master project (summer 2007): "Sensitivity analysis applied to genetic circuit induction protocols".
* Co-Supervisor master project (summer 2007): "Sensitivity analysis applied to genetic circuit induction protocols".
* Co-Supervisor UROP project (summer 2007): "Building modular biobricks models implemented with CellML"
* Co-Supervisor UROP project (summer 2007): "Building modular biobricks models implemented with CellML"
== OWW Contributions ==
== OWW Contributions ==
 +
* [[User:Vincent_Rouilly/Data_Exchange_Standards_For_Synthetic_Biology | Data_Exchange_Standards_For_Synthetic_Biology]]
 +
* [[User:Vincent_Rouilly/Computational_Biology_With_R | Computational Biology with R]]
 +
* [[User:Vincent_Rouilly/Synthetic_Biology_Community_Pointers | SynBio Community Pointers]]
* [[Citizen Science/Open Spectrophotometer Project | Open Spectrophotometer Project]]
* [[Citizen Science/Open Spectrophotometer Project | Open Spectrophotometer Project]]
* Steering committee member and outreach co-chair.
* Steering committee member and outreach co-chair.
Line 106: Line 138:
==Cool [http://en.wikipedia.org/wiki/Open_hardware Open Source Hardware] Projects==
==Cool [http://en.wikipedia.org/wiki/Open_hardware Open Source Hardware] Projects==
* [http://www.arduino.cc/ Arduino], microcontroller.
* [http://www.arduino.cc/ Arduino], microcontroller.
 +
* [http://www.garagefab.cc/contraptor Contraptor], DIY cartesian robot (XY plotter, CNC router).
* [http://reprap.org/bin/view/Main/WebHome RepRap], 3D printer.
* [http://reprap.org/bin/view/Main/WebHome RepRap], 3D printer.
* [http://www.buglabs.net/ BugLabs], modular linux computer.
* [http://www.buglabs.net/ BugLabs], modular linux computer.
Line 111: Line 144:
* [http://www.openservo.com/ OpenServo], servo motor.
* [http://www.openservo.com/ OpenServo], servo motor.
* [http://www.linuxelectrons.com/features/howto/consolidated-hacking-guide-linksys-wrt54gl Linksys WRT54GL], router.
* [http://www.linuxelectrons.com/features/howto/consolidated-hacking-guide-linksys-wrt54gl Linksys WRT54GL], router.
-
*
+
* [http://www.buildlog.net/blog/2011/02/buildlog-net-2-x-laser/ Laser Cutter 2.x]
 +
* from KickStarter:
 +
** [http://www.kickstarter.com/projects/93832939/makerslide-open-source-linear-bearing-system MakerSlide Open Source Linear Bearing System]
 +
** [http://www.kickstarter.com/projects/nortd/lasersaur-open-source-laser-cutter-0?ref=category Laseraur open source laser cutter]
 +
** [http://www.kickstarter.com/projects/701662757/makerbeam-an-open-source-building-kit MakerBeam an Open Source building kit]
 +
** [http://www.kickstarter.com/projects/nicholasclewis/inkshield-an-open-source-inkjet-shield-for-arduino?ref=category inkshield for Arduino]
 +
 
==Recommended Books==
==Recommended Books==
* [http://www.amazon.com/Introduction-Systems-Biology-Mathematical-Computational/dp/1584886420 'An Introduction to Systems Biology', Uri Alon]
* [http://www.amazon.com/Introduction-Systems-Biology-Mathematical-Computational/dp/1584886420 'An Introduction to Systems Biology', Uri Alon]
Line 167: Line 206:
* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
-
 
+
<!--
== OWW ideas (random) ==
== OWW ideas (random) ==
=== building a stronger community ===
=== building a stronger community ===
Line 181: Line 220:
**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
-
 
+
-->
== Project ==
== Project ==
Here is an overview of the modelling framework I am working on:
Here is an overview of the modelling framework I am working on:
[[Image:MSMrouilly2.png]]
[[Image:MSMrouilly2.png]]
 +
== Delicio.us Tags ==
 +
<html>
 +
<body>
 +
<script type="text/javascript" src="http://feeds.www.delicious.com/v2.1/js/tags/Manosquin?title=Vincent's%20Tags&icon&count=50&sort=freq&flow=cloud&totals&name&showadd&color=73adff-3274d0&size=12-35"></script>
 +
</body>
 +
</html>
==Who is visiting my page?==
==Who is visiting my page?==

Current revision


Vincent Rouilly's Profile


email: vincent.rouilly [-at-] gmail [-dot-] com

Paris, France.

join my LinkedIn Network

Work Experiences

  • Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
  • Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
  • Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
  • GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
  • Visiospace, Paris, Software R&D Engineer.

Education

  • PhD, Computational Biology, Department of Bioengineering, Imperial College London.
  • M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).

Affiliations

Synthetic Biology in the making

(or how to keep track of what is happening in the Synthetic Biology community)

Research Interests

  • Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
  • Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
  • Laboratory Information System.
  • Laboratory Automation

My Open Source Hardware/Software Projects to support Synthetic Biology

Past Projects

  • Recombineering for Synthetic Biology
    • Homology recombination-based promoter screening construct.
    • Homology recombination-based rolling device integration.
  • Droplet-based Microfluidics for Synthetic Biology
  • Open Source Hardware for Synthetic Biology
    • Arduino-based Peltier controller
    • Colony counting / picking system

Online shared resources

Teaching Experience

OWW Contributions

Other:

Interesting links found on OWW

Useful Open Source Softwares

Cool Open Source Hardware Projects

Recommended Books

Do-It-Yourself / Developing World Technologies for Biological Engineering

General

DNA manipulation

Measuremements and Characterization

Data Acquisition, Control and Lab Automation

Project

Here is an overview of the modelling framework I am working on: Image:MSMrouilly2.png

Delicio.us Tags

Who is visiting my page?

Locations of visitors to this page

Sandbox

Personal tools