User:Vincent Rouilly: Difference between revisions
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* [http://www.wired.com/wired/archive/11.12/tools.html?pg=3 WIRED: DNA Sequence Kit] | * [http://www.wired.com/wired/archive/11.12/tools.html?pg=3 WIRED: DNA Sequence Kit] | ||
* [http://www.newscientist.com/article.ns?id=dn11763 DIY PCR cycler (New Scientist)] | * [http://www.newscientist.com/article.ns?id=dn11763 DIY PCR cycler (New Scientist)] | ||
* [http://www.york.ac.uk/res/sots/activities/diydna.htm DIY DNA extraction] | |||
== OWW ideas (random) == | == OWW ideas (random) == | ||
Revision as of 09:29, 1 October 2007
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Vincent Rouilly, PhD Candidate Department of Bioengineering email: vincent.rouilly03 (at) imperial.ac.uk
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Education and Past Work Experiences
- PhD candidate at Imperial College London
- GE Medical Systems, Paris, Software R&D Engineer.
- Visiospace, Paris, Software R&D Engineer.
- M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
Research Interests
- Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
- Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
- Laboratory Information System.
- Lab Automation
Current Research Projects
- Writing-up PhD thesis: "An Engineering Approach To The Modeling Of Genetic Circuits"
- iGEM instructor (2006, 2007)
- Supervising master project: "Sensitivity analysis applied to genetic circuit induction protocols".
- Supervising UROP project: "Building modular biobricks models implemented with CellML"
OWW Contributions
- Steering committee member and outreach co-chair.
- minicells
- Cell-Free Systems
- Hands on BioBrick Activity for a science fair
- Lab Automation Review
- Stochastic Gene Expression
- Registry of Standard Models
- Registry of Standard Models/Architecture
- Catalog of standard models in CellML
- Basic Components in CellML
- iGEM@imperial project framework
- iGEM@imperial Instructor
- iGEM@imperial template to document a part
- IGEM WetLab Planning Tool
- OWW Image Annotation Tool
Other:
Interesting links found on OWW
Recommended Books
- 'An Introduction to Systems Biology', Uri Alon
- 'System Modeling in Cellular Biology: From Concepts to Nuts and Bolts', Szallasi, Stelling and Periwal
- 'Stochastic Modelling for Systems Biology', D. Wilkinson
- 'Design And Analysis of Experiments', D.C. Montgomery
- 'Sensitivity Analysis', A. Saltelli
DIY Synthetic Biology
- Dr. Shawn's Molecular Biology Science Fair Projects
- BioHackery
- DIY lab scanner (New Scientist)
- DIY microarrays
- THE MACGYVER PROJECT: GENOMIC DNA EXTRACTION AND GEL ELECTROPHORESIS EXPERIMENTS USING EVERYDAY MATERIALS
- MAKE zine
- WIRED: DNA Sequence Kit
- DIY PCR cycler (New Scientist)
- DIY DNA extraction
OWW ideas (random)
building a stronger community
- get people to define on their User page their area(s) of interest using 'wiki-categories' (could help to find collaborators).
- if people defines their area of interest using references, would be interesting to use that information to match people's profiles.
support to find relevant info
- 'contextual' browsing ('hacking' google-ads-type-of-service to show other relevant wiki-pages or wiki-users on the side of a wiki page ... instead of ads).
- set essential keywords pages. 'Experts', in a given field, would recommend a set of keywords to help new comers to google more efficiently.
- setting-up a calendar with info about conferences, workshops, submission deadlines ...
adding features
- implementing java applets which are enable to read/write an xml-like format into the wiki:
- image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
- graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
Project
Here is an overview of the modelling framework I am working on:
Who is visiting my page?
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