User:Victor Tapia

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ACTUALLY SEARCHING FOR A NEW POSITION<br>
ACTUALLY SEARCHING FOR A NEW POSITION<br>
25.02.2012<br>
25.02.2012<br>
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[http://www.openwetware.org/wiki/Image:VE_Tapia_2012-05_Mappe-EN.pdf Download CV-EN]
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[http://openwetware.org/images/6/67/VE_Tapia_2012-05_Mappe-EN.pdf Download CV-EN]
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<br><br>
Former institutions:<br>
Former institutions:<br>
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last change on 28.02.2012<br>
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[http://victortapia.brandyourself.com jet another profile]<br>
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[http://de.linkedin.com/pub/victor-tapia/29/285/a43 jet another other profile]
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==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
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* [http://openwetware.org/wiki/Molecular_Recognition_Laboratorium#Structural_Modularity__in_Protein-Protein_Recognition Modularity of Protein Structure and Cellular Signal Transduction].  
* [http://openwetware.org/wiki/Molecular_Recognition_Laboratorium#Structural_Modularity__in_Protein-Protein_Recognition Modularity of Protein Structure and Cellular Signal Transduction].  
* Protein Folding and Neurodegenerative Deseases.
* Protein Folding and Neurodegenerative Deseases.
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==Education==
==Education==
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May 2010 – April 2011 |  <br>
May 2010 – April 2011 |  <br>
Fellow scientific associate in “Penelope” (EU Marie Curie Research Training Network, MRTN-CT-2006- 0036076) coordinated by Dr. Luis Serrano, Centre for Genomic Regulation, Barcelona
Fellow scientific associate in “Penelope” (EU Marie Curie Research Training Network, MRTN-CT-2006- 0036076) coordinated by Dr. Luis Serrano, Centre for Genomic Regulation, Barcelona
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==Publications==
==Publications==
[[Image:victor_tapia.jpg|200px|right]]
[[Image:victor_tapia.jpg|200px|right]]
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<div style="padding: 10px; color: #000; background-color: #CEF2E0; width: 600px">
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*  10 - M Spiess, E Verschueren, VE TAPIA, PM Kim, A Norgaard, C Landgraf, R Volkmer, F Hochstenbach, B Distel, B Winsor, L Serrano (2012). “Evolution of the SH3 domain interactome across yeast species.” [Manuscript in preparation].
+
*  10 - M Spiess, E Verschueren, VE TAPIA, PM Kim, A Norgaard, C Landgraf, R Volkmer, F Hochstenbach, B Distel, B Winsor, L Serrano (2012). “EVOLUTION OF THE SH3 DOMAIN INTERACTOME ACROSS YEAST SPECIES”
-
*  9 - Anna Ulbricht, VE TAPIA, Peter F.M. van der Ven, Dieter O. Fürst, R Volkmer & Jörg Höhfeld. (2012) “Cellular mechanotransduction relies on chaperone-assisted selective autophagy“ [Manuscript in preparation]
+
*:''[Manuscript in preparation].''
-
*  8 - Volkmer, R & V Tapia. (2011) “Exploring Protein-Protein Interactions with Synthetic Peptide Arrays”. Mini-Reviews in Organic Chemistry 8(2): 164.
+
*  9 - Anna Ulbricht, Felix J. Eppler, VE TAPIA, Peter F.M. van der Ven, Padmanabhan Vakeel,  Daniela Stadel, Albert Haas, Bernd Hoffmann, Paul Saftig, Christian Behrends, Dieter O. Fürst, Rudolf Volkmer, Waldemar Kolanus & Jörg Höhfeld. (2012) “CELLULAR MECHANOTRANSDUCTION RELIES ON TENSION-INDUCED AND CHAPERONE-ASSISTED AUTOPHAGY“
 +
*:''[Manuscript submitted on June 29 2012]''
 +
*  8 - Volkmer, R & V Tapia. (2011) “EXPLORING PROTEIN-PROTEIN INTERACTIONS WITH SYNTHETIC PEPTIDE ARRAYS”. Mini-Reviews in Organic Chemistry 8(2): 164.
 +
*:''[http://www.ingentaconnect.com/content/ben/mroc/2011/00000008/00000002/art00009 View Abstract from MROC]''
*  7 - Volkmer, R, I Kretzschmar & VE TAPIA. (2011) “Mapping receptor-ligand in-teractions with synthetic peptide arrays: Exploring the structure and function of membrane receptors”. European Journal of Cell Biology 91(4): 349.
*  7 - Volkmer, R, I Kretzschmar & VE TAPIA. (2011) “Mapping receptor-ligand in-teractions with synthetic peptide arrays: Exploring the structure and function of membrane receptors”. European Journal of Cell Biology 91(4): 349.
-
*:''[http://dx.doi.org/10.1016/j.ejcb.2011.03.004/ View Abstract from EJCB]''
+
*:''[http://dx.doi.org/10.1016/j.ejcb.2011.03.004 View Abstract from EJCB]''
*  6 - Tapia VE, Nicolaescu E, McDonald CB, Musi V, Oka T, Inayoshi Y, Satteson AC, Mazack V, Humbert J, Gaffney CJ, Beullens M, Schwartz CE, Landgraf C, Volkmer R, Pastore A, Farooq A, Bollen M, Sudol M. (2010) "Y65C MISSENSE MUTATION IN THE WW DOMAIN OF THE GOLABI-ITO-HALL SYNDROME PROTEIN PQBP1 AFFECTS ITS BINDING ACTIVITY AND DEREGULATES PRE-mRNA SPLICING." J Biol Chem.;285(25):19391-401. Epub 2010 Apr 21.
*  6 - Tapia VE, Nicolaescu E, McDonald CB, Musi V, Oka T, Inayoshi Y, Satteson AC, Mazack V, Humbert J, Gaffney CJ, Beullens M, Schwartz CE, Landgraf C, Volkmer R, Pastore A, Farooq A, Bollen M, Sudol M. (2010) "Y65C MISSENSE MUTATION IN THE WW DOMAIN OF THE GOLABI-ITO-HALL SYNDROME PROTEIN PQBP1 AFFECTS ITS BINDING ACTIVITY AND DEREGULATES PRE-mRNA SPLICING." J Biol Chem.;285(25):19391-401. Epub 2010 Apr 21.
-
*:''This work explores the effect of a point mutation leading to X-LMR at the reductionist level of domain-peptide interactions, inferes potential affected functions, and tests inferences on pre-mRNA splicing - [http://www.jbc.org/content/285/25/19391.full.pdf+html/ Download from JBC]''
+
*:''This work explores the effect of a point mutation leading to X-LMR at the reductionist level of domain-peptide interactions, inferes potential affected functions, and tests inferences on pre-mRNA splicing.
 +
*:''[http://www.jbc.org/content/285/25/19391.full.pdf+html/ Download from JBC]''
*  5 - Mahrenholz CC, Tapia V, Stigler RD, Volkmer R. (2010) "A STUDY TO ASSESS THE CROSS-REACTIVITY OF CELLULOSE MEMBRANE-BOUND PEPTIDES WITH DETECTION SYSTEMS: AN ANALYSIS AT THE AMINO ACID LEVEL." J Pept Sci.;16(6):297-302.
*  5 - Mahrenholz CC, Tapia V, Stigler RD, Volkmer R. (2010) "A STUDY TO ASSESS THE CROSS-REACTIVITY OF CELLULOSE MEMBRANE-BOUND PEPTIDES WITH DETECTION SYSTEMS: AN ANALYSIS AT THE AMINO ACID LEVEL." J Pept Sci.;16(6):297-302.
*:''ever wanted to see if your favorite detection system reacts with cellulose-bound peptides?  Well, chances are given that it is one of the three covered here: TAMRA-dye, luminol turn-over, and FITC''
*:''ever wanted to see if your favorite detection system reacts with cellulose-bound peptides?  Well, chances are given that it is one of the three covered here: TAMRA-dye, luminol turn-over, and FITC''
*  4 - Tapia VE & Volkmer R (2009) "EXPLORING AND PROFILING PROTEIN FUNCTION WITH PEPTIDE ARRAYS" in: Methods in Molecular Biology, Vol 570 (Eds. M Cretich & M Chiari). Humana Press. - ISBN: 978-1-60327-393-0.  
*  4 - Tapia VE & Volkmer R (2009) "EXPLORING AND PROFILING PROTEIN FUNCTION WITH PEPTIDE ARRAYS" in: Methods in Molecular Biology, Vol 570 (Eds. M Cretich & M Chiari). Humana Press. - ISBN: 978-1-60327-393-0.  
-
*:''This work reviews the peptide array technology focusing on technological advancements, oriented immobilization of peptide probes, and some interesting applications. Going along the philosophy of the monography series, we give some general recomendations on methods and instruments. See the following newsletter comments by Tony Fong: Q&A: Raising the Profile of Peptide Arrays for Studying Protein Function, ProteoMonitor, August 13, 2009 - [http://www.ncbi.nlm.nih.gov/pubmed/19649587/ View abstract at PubMed]''
+
*:''This work reviews the peptide array technology focusing on technological advancements, oriented immobilization of peptide probes, and some interesting applications. Going along the philosophy of the monography series, we give some general recomendations on methods and instruments. See the following newsletter comments by Tony Fong: Q&A: Raising the Profile of Peptide Arrays for Studying Protein Function, ProteoMonitor, August 13, 2009.''
 +
*:''[http://www.ncbi.nlm.nih.gov/pubmed/19649587/ View abstract at PubMed]''
 +
*:''[http://www.genomeweb.com/proteomics/qa-raising-profile-peptide-arrays-studying-protein-function Read the newsletter by Tony Fong]''
*  3 - Tapia VE, Ay B, Triebus J, Wolter E, Boisguerin P, Volkmer R. EVALUATING THE COUPLING EFFICIENCY OF PHOSPHORYLATED AMINO ACIDS FOR SPOT SYNTHESIS. J Pept Sci. 2008 Dez ;14(12):1309-1314. - PMID: 18816512.
*  3 - Tapia VE, Ay B, Triebus J, Wolter E, Boisguerin P, Volkmer R. EVALUATING THE COUPLING EFFICIENCY OF PHOSPHORYLATED AMINO ACIDS FOR SPOT SYNTHESIS. J Pept Sci. 2008 Dez ;14(12):1309-1314. - PMID: 18816512.
-
*:''This work was carried out to adapt "building block" approaches for the generation of phosphopeptides through resine-supported solid-phase peptide synthesis to the spot-technology, which relies on cellulose as support. It compares different coupling strategies for the incorporation of protected phoshoaminoacids into determined positions of synthetic peptides. We find that the use of EEDQ (caution, neurotoxic!) as coupling activator is the most efficient strategy in our comparison.''
+
*:''This work was carried out to adapt "building block" approaches for the generation of phosphopeptides through resine-supported solid-phase peptide synthesis to the spot-technology, which relies on cellulose as support. It compares different coupling strategies for the incorporation of protected phoshoaminoacids into determined positions of synthetic peptides. We find that the use of EEDQ as coupling activator is the most efficient strategy in our comparison.''
 +
*:''[http://www.ncbi.nlm.nih.gov/pubmed/18816512 view abstract at PubMed]''
*  2 - Tapia VE, Bongartz J, Schutkowski M, Bruni N, Weiser A, Ay B, Volkmer R, Or-Guil M. AFFINITY PROFILING USING THE PEPTIDE MICROARRAY TECHNOLOGY: A CASE STUDY. Anal Biochem. 2007 Apr 1;363(1):108-118. - PMID: 17288979.  
*  2 - Tapia VE, Bongartz J, Schutkowski M, Bruni N, Weiser A, Ay B, Volkmer R, Or-Guil M. AFFINITY PROFILING USING THE PEPTIDE MICROARRAY TECHNOLOGY: A CASE STUDY. Anal Biochem. 2007 Apr 1;363(1):108-118. - PMID: 17288979.  
*:''This work analyses the predictive potential of microarray-based binding assays. Fluorescent SI-measurements were used to fit a mass-action derived model estimating the observed affinity (equil. diss. const.).''
*:''This work analyses the predictive potential of microarray-based binding assays. Fluorescent SI-measurements were used to fit a mass-action derived model estimating the observed affinity (equil. diss. const.).''
 +
*:''[http://www.ncbi.nlm.nih.gov/pubmed/17288979/ View abstract at PubMed]''
*  1 - Weiser AA, Or-Guil M, Tapia VE, Leichsenring A, Schuchhardt J, Frommel C, Volkmer-Engert R. SPOT SYNTHESIS: RELIABILITY OF ARRAY-BASED MEASUREMENT OF PEPTIDE BINDING AFFINITY. Anal Biochem. 2005 Juli 15;342(2):300-311. - PMID: 15950918.  
*  1 - Weiser AA, Or-Guil M, Tapia VE, Leichsenring A, Schuchhardt J, Frommel C, Volkmer-Engert R. SPOT SYNTHESIS: RELIABILITY OF ARRAY-BASED MEASUREMENT OF PEPTIDE BINDING AFFINITY. Anal Biochem. 2005 Juli 15;342(2):300-311. - PMID: 15950918.  
*:''This work analyses the quantitative potential of measurements derived from peptide macroarray-based immunobinding assays. Chemoluminiscent signal intensity data was confronted with independent "golden stardard" measurements (surface plasmon resonance-based binding assays on a BIAcoreX maschine).''
*:''This work analyses the quantitative potential of measurements derived from peptide macroarray-based immunobinding assays. Chemoluminiscent signal intensity data was confronted with independent "golden stardard" measurements (surface plasmon resonance-based binding assays on a BIAcoreX maschine).''
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==Presentations==
==Presentations==
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<div style="padding: 10px; color: #000; background-color: #CEF2E0; width: 600px">  
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<div style="padding: 10px; color: #000; background-color: #CEF2E0; width: 500px">  
*  6 - V.E. Tapia &  R. Volkmer; Steady State Analysis of Peptide Array-based Binding Assays: A Mathematical Model for Disease Diagnostic and Affinity Profiling of Bimolecular Interactions. 9th German Peptide Symposium, 2009, Göttingen.  
*  6 - V.E. Tapia &  R. Volkmer; Steady State Analysis of Peptide Array-based Binding Assays: A Mathematical Model for Disease Diagnostic and Affinity Profiling of Bimolecular Interactions. 9th German Peptide Symposium, 2009, Göttingen.  
*  5 - Mahrenholz CC, Tapia V, Stigler R, Volkmer R; Peptides crossreacting with detection systems – Analysis at the amino acid level. 9th Peptide Symposium (2009).
*  5 - Mahrenholz CC, Tapia V, Stigler R, Volkmer R; Peptides crossreacting with detection systems – Analysis at the amino acid level. 9th Peptide Symposium (2009).

Revision as of 17:16, 27 January 2013

Contents

Contact Information


Víctor E . Tapia Mancilla
Email: ve.tapia.m@gmail.com

ACTUALLY SEARCHING FOR A NEW POSITION
25.02.2012
Download CV-EN

Former institutions:


Charité - Universitätsmedizin Berlin
Institut für medizinische Immunologie
AG Molekulare Bibliotheken
Dr. Rudolf Volkmer
Hessische Str. 3-4, 10115 Berlin

Tel.: +49-30-450 524267
oder +49-30-450 524317
Fax: +49-30-450 524962
E-mail: rve@charite.de


- - - - - - - - - - - - - - - - - - - - - - - -


UMR7156 CNRS-Université de Strasbourg
Equipe Cytosquelette d'actine et Trafic intracellulaire
Département de Biologie moléculaire et cellulaire
Barbara Winsor, PhD
(† 29.09.2011)


- - - - - - - - - - - - - - - - - - - - - - - -


Humboldt Universität, Berlin
Institute for Theoretical Biology
Systems Immunology
Michal Or-Guil



Bibliography manager
last change on 28.02.2012
jet another profile
jet another other profile



Research interests



Education

May 2010 – April 2011 |
Fellow scientific associate in “Penelope” (EU Marie Curie Research Training Network, MRTN-CT-2006- 0036076) coordinated by Dr. Luis Serrano, Centre for Genomic Regulation, Barcelona


July 2008 – April 2010 |
Fellow scientific associate in “Structure and Function of Membrane Receptors” (Collaborative Research Centre, SFB 449) coordinated by Prof. Dr. Volker Haucke, Freie Universität, Berlin


Sept. 2003 – June 2004 |
Diploma thesis in the Systems Immunology Lab led by Dr. M. Or-Guil at the Institute for theoretical Biology of the Humboldt Universität in collaboration with the Charité Universitätsklinikum, Berlin


Oct. 1998 – June 2004 |
Study of Biology with a Biochemistry major at the Humboldt Universität, Berlin


May 1996 – Sept. 1998 |
German as Foreign Language, German Literature and Philosophy, Epistemology, and Sociobiology as guest student at the RWTH, Aachen.


March 1979 – Dec. 1991 |
School in Viña del Mar, Chile and Philadelphia, PA, USA.



Publications

  • 10 - M Spiess, E Verschueren, VE TAPIA, PM Kim, A Norgaard, C Landgraf, R Volkmer, F Hochstenbach, B Distel, B Winsor, L Serrano (2012). “EVOLUTION OF THE SH3 DOMAIN INTERACTOME ACROSS YEAST SPECIES”
    [Manuscript in preparation].
  • 9 - Anna Ulbricht, Felix J. Eppler, VE TAPIA, Peter F.M. van der Ven, Padmanabhan Vakeel, Daniela Stadel, Albert Haas, Bernd Hoffmann, Paul Saftig, Christian Behrends, Dieter O. Fürst, Rudolf Volkmer, Waldemar Kolanus & Jörg Höhfeld. (2012) “CELLULAR MECHANOTRANSDUCTION RELIES ON TENSION-INDUCED AND CHAPERONE-ASSISTED AUTOPHAGY“
    [Manuscript submitted on June 29 2012]
  • 8 - Volkmer, R & V Tapia. (2011) “EXPLORING PROTEIN-PROTEIN INTERACTIONS WITH SYNTHETIC PEPTIDE ARRAYS”. Mini-Reviews in Organic Chemistry 8(2): 164.
    View Abstract from MROC
  • 7 - Volkmer, R, I Kretzschmar & VE TAPIA. (2011) “Mapping receptor-ligand in-teractions with synthetic peptide arrays: Exploring the structure and function of membrane receptors”. European Journal of Cell Biology 91(4): 349.
    View Abstract from EJCB
  • 6 - Tapia VE, Nicolaescu E, McDonald CB, Musi V, Oka T, Inayoshi Y, Satteson AC, Mazack V, Humbert J, Gaffney CJ, Beullens M, Schwartz CE, Landgraf C, Volkmer R, Pastore A, Farooq A, Bollen M, Sudol M. (2010) "Y65C MISSENSE MUTATION IN THE WW DOMAIN OF THE GOLABI-ITO-HALL SYNDROME PROTEIN PQBP1 AFFECTS ITS BINDING ACTIVITY AND DEREGULATES PRE-mRNA SPLICING." J Biol Chem.;285(25):19391-401. Epub 2010 Apr 21.
    This work explores the effect of a point mutation leading to X-LMR at the reductionist level of domain-peptide interactions, inferes potential affected functions, and tests inferences on pre-mRNA splicing.
    Download from JBC
  • 5 - Mahrenholz CC, Tapia V, Stigler RD, Volkmer R. (2010) "A STUDY TO ASSESS THE CROSS-REACTIVITY OF CELLULOSE MEMBRANE-BOUND PEPTIDES WITH DETECTION SYSTEMS: AN ANALYSIS AT THE AMINO ACID LEVEL." J Pept Sci.;16(6):297-302.
    ever wanted to see if your favorite detection system reacts with cellulose-bound peptides? Well, chances are given that it is one of the three covered here: TAMRA-dye, luminol turn-over, and FITC
  • 4 - Tapia VE & Volkmer R (2009) "EXPLORING AND PROFILING PROTEIN FUNCTION WITH PEPTIDE ARRAYS" in: Methods in Molecular Biology, Vol 570 (Eds. M Cretich & M Chiari). Humana Press. - ISBN: 978-1-60327-393-0.
    This work reviews the peptide array technology focusing on technological advancements, oriented immobilization of peptide probes, and some interesting applications. Going along the philosophy of the monography series, we give some general recomendations on methods and instruments. See the following newsletter comments by Tony Fong: Q&A: Raising the Profile of Peptide Arrays for Studying Protein Function, ProteoMonitor, August 13, 2009.
    View abstract at PubMed
    Read the newsletter by Tony Fong
  • 3 - Tapia VE, Ay B, Triebus J, Wolter E, Boisguerin P, Volkmer R. EVALUATING THE COUPLING EFFICIENCY OF PHOSPHORYLATED AMINO ACIDS FOR SPOT SYNTHESIS. J Pept Sci. 2008 Dez ;14(12):1309-1314. - PMID: 18816512.
    This work was carried out to adapt "building block" approaches for the generation of phosphopeptides through resine-supported solid-phase peptide synthesis to the spot-technology, which relies on cellulose as support. It compares different coupling strategies for the incorporation of protected phoshoaminoacids into determined positions of synthetic peptides. We find that the use of EEDQ as coupling activator is the most efficient strategy in our comparison.
    view abstract at PubMed
  • 2 - Tapia VE, Bongartz J, Schutkowski M, Bruni N, Weiser A, Ay B, Volkmer R, Or-Guil M. AFFINITY PROFILING USING THE PEPTIDE MICROARRAY TECHNOLOGY: A CASE STUDY. Anal Biochem. 2007 Apr 1;363(1):108-118. - PMID: 17288979.
    This work analyses the predictive potential of microarray-based binding assays. Fluorescent SI-measurements were used to fit a mass-action derived model estimating the observed affinity (equil. diss. const.).
    View abstract at PubMed
  • 1 - Weiser AA, Or-Guil M, Tapia VE, Leichsenring A, Schuchhardt J, Frommel C, Volkmer-Engert R. SPOT SYNTHESIS: RELIABILITY OF ARRAY-BASED MEASUREMENT OF PEPTIDE BINDING AFFINITY. Anal Biochem. 2005 Juli 15;342(2):300-311. - PMID: 15950918.
    This work analyses the quantitative potential of measurements derived from peptide macroarray-based immunobinding assays. Chemoluminiscent signal intensity data was confronted with independent "golden stardard" measurements (surface plasmon resonance-based binding assays on a BIAcoreX maschine).

Presentations

  • 6 - V.E. Tapia & R. Volkmer; Steady State Analysis of Peptide Array-based Binding Assays: A Mathematical Model for Disease Diagnostic and Affinity Profiling of Bimolecular Interactions. 9th German Peptide Symposium, 2009, Göttingen.
  • 5 - Mahrenholz CC, Tapia V, Stigler R, Volkmer R; Peptides crossreacting with detection systems – Analysis at the amino acid level. 9th Peptide Symposium (2009).
  • 4 - V.E. Tapia, C. Landgraf, A. Pastore, M. Sudol, R. Volkmer; Analysis of a missense mutation in the WW domain of PQBP1. FEBS Workshop 2007, Protein Modules and Networks in Health and Disease, Seefeld, Austria.
  • 3 - V.E. Tapia et al; titel; 2008 Brownschweig, Germany
  • 2 - V.E. Tapia et al; titel; 2007 Frankfurt, Germany
  • 1 - V.E. Tapia & M. Or-Guil; Reading Natural Autoimmune Responses with Random Peptide Arrays; Workshop "Strukturbildung in Chemie und Biophysik", Salzwedel, Germany, October 2004.

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