User:Torsten Waldminghaus: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
(→OWW) |
No edit summary |
||
| (10 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
Hi, my name is Torsten Waldminghaus, and I'm | Hi, my name is Torsten Waldminghaus, and I'm PI of the [[Waldminghaus | Waldminghaus Lab]]. I was let to [[OpenWetWare]] by google years back, searching for certain protocols. I benefit a lot from people sharing their protocols on the internet and thought it might be a good idea to also let the world participate on my wisdom and experince. If you still want to you can [[Special:Emailuser/Torsten Waldminghaus|email me through OpenWetWare]]. Below I'll describe a bit more about myself and the stuff I'm interested in. | ||
== CV == | == CV == | ||
* | *since 2011: Professor for Synthetic Microbiology at [http://www.synmikro.com/en SYNMIKRO - Center for Synthetic Microbiology] of the Philipps-Universität Marburg (Germany) and PI of the [[Waldminghaus | Waldminghaus Lab]] | ||
* | * 2007-2011: Postdoc at the Department of Cell Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo (Norway) in the lab of [[Skarstad|Kirsten Skarstad]] | ||
*2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the [http://www.ruhr-uni-bochum.de/mikrobiologie/ lab of Franz Narberhaus] | *2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the [http://www.ruhr-uni-bochum.de/mikrobiologie/ lab of Franz Narberhaus] | ||
| Line 34: | Line 34: | ||
A bit more detailed I enjoy working on: | A bit more detailed I enjoy working on: | ||
* Regulation of replication in bacteria | * Regulation of replication in bacteria | ||
* | * Synthetic chromosomes | ||
* Searching funny patterns on chromosomes or in proteins | * Searching funny patterns on chromosomes or in proteins <cite>Line-2011</cite> | ||
==Publications== | ==Publications== | ||
<biblio> | <biblio> | ||
#Stokke-2011 pmid=21163839 | |||
#Waldminghaus-2012 pmid=22373925 | |||
#Line-2011 pmid=21219462 | |||
#Waldminghaus-2010-Gaubig pmid=20864473 | #Waldminghaus-2010-Gaubig pmid=20864473 | ||
#Waldminghaus-2010 pmid=20602746 | #Waldminghaus-2010 pmid=20602746 | ||
| Line 63: | Line 66: | ||
*[[/Strains|My strain list]] | *[[/Strains|My strain list]] | ||
*[[/Primers|My primer list]] | *[[/qPCR-Primers|My qPCR-primer list]] | ||
*[[/Primer|My primer list]] | |||
*[[/ds-oligos|My double strand oligo list]] | |||
*[[/primer_calculation | primer concentrations]] | *[[/primer_calculation | primer concentrations]] | ||
*[http://www.blogger.com/profile/04081156472724317833 blogger profile] | *[http://www.blogger.com/profile/04081156472724317833 blogger profile] | ||
*[http://www.citeulike.org/user/TorstenWaldminghaus CiteULike library] | *[http://www.citeulike.org/user/TorstenWaldminghaus CiteULike library] | ||
| Line 84: | Line 88: | ||
*[[Hardcore PubMeding (advanced PubMed searching)]] | *[[Hardcore PubMeding (advanced PubMed searching)]] | ||
*[[OriC/ter ratio determination]] | *[[OriC/ter ratio determination]] | ||
*[[Cell cycle analysis]] | |||
*[[Berkmen | Berkmen lab]] | *[[Berkmen | Berkmen lab]] | ||
*[[Mazel | Mazel lab]] | *[[Mazel | Mazel lab]] | ||
Latest revision as of 08:28, 27 August 2013
Hi, my name is Torsten Waldminghaus, and I'm PI of the Waldminghaus Lab. I was let to OpenWetWare by google years back, searching for certain protocols. I benefit a lot from people sharing their protocols on the internet and thought it might be a good idea to also let the world participate on my wisdom and experince. If you still want to you can email me through OpenWetWare. Below I'll describe a bit more about myself and the stuff I'm interested in.
CV
- since 2011: Professor for Synthetic Microbiology at SYNMIKRO - Center for Synthetic Microbiology of the Philipps-Universität Marburg (Germany) and PI of the Waldminghaus Lab
- 2007-2011: Postdoc at the Department of Cell Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo (Norway) in the lab of Kirsten Skarstad
- 2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the lab of Franz Narberhaus
- 2002-2004: Studies in bioinformatics at the University of applied science Berlin (Germany) Master-thesis: ‘In silico analysis and selection of RNA secondary structures’ at the Max Planck Institute for Infection Biology under supervision of Volker Patzel
- 1999-2002: Studies in biology at the Ernst-Moritz-Arndt-University Greifswald (Germany) Diploma-thesis: ‘Investigations on the expression of clpX in Bacillus subtilis’ at the Division for Microbial Physiology and Molecular Biology in the lab of Michael Hecker
- 1996-1999: Basic studies in biology at the University of Potsdam (Germany)
- 1996: Theological studies and volunteer at the International Torchbearer Bibleschool in Holsby Brunn (Sweden)
Grants and Awards
- 2008-2010: Two year postdoc grant of the German Research Council (DFG)
- 2008: Ruth Massenberg Prize of Ruhr-University Bochum (Germany) for outstanding PhD thesis
- 2008: Travel grant of FEMS
- 2006: Travel grant of Ruth und Gert Massenberg Stiftung
Research interests
In general I like bacteria and complex systems.
A bit more detailed I enjoy working on:
- Regulation of replication in bacteria
- Synthetic chromosomes
- Searching funny patterns on chromosomes or in proteins [1]
Publications
Error fetching PMID 21163839:
Error fetching PMID 22373925:
Error fetching PMID 21219462:
Error fetching PMID 20864473:
Error fetching PMID 19535917:
Error fetching PMID 17647020:
Error fetching PMID 17630972:
Error fetching PMID 14679237:
Error fetching PMID 22373925:
Error fetching PMID 21219462:
Error fetching PMID 20864473:
Error fetching PMID 19535917:
Error fetching PMID 17647020:
Error fetching PMID 17630972:
Error fetching PMID 14679237:
- Error fetching PMID 21219462:
- Error fetching PMID 21163839:
- Error fetching PMID 22373925:
- Error fetching PMID 20864473:
- Waldminghaus T and Skarstad K. ChIP on Chip: surprising results are often artifacts. BMC Genomics. 2010 Jul 5;11:414. DOI:10.1186/1471-2164-11-414 |
- Error fetching PMID 19535917:
- Waldminghaus T and Skarstad K. The Escherichia coli SeqA protein. Plasmid. 2009 May;61(3):141-50. DOI:10.1016/j.plasmid.2009.02.004 |
- Waldminghaus T, Kortmann J, Gesing S, and Narberhaus F. Generation of synthetic RNA-based thermosensors. Biol Chem. 2008 Oct;389(10):1319-26. DOI:10.1515/BC.2008.150 |
- Error fetching PMID 17647020:
- Error fetching PMID 17630972:
- Narberhaus F, Waldminghaus T, and Chowdhury S. RNA thermometers. FEMS Microbiol Rev. 2006 Jan;30(1):3-16. DOI:10.1111/j.1574-6976.2005.004.x |
- Waldminghaus T, Fippinger A, Alfsmann J, and Narberhaus F. RNA thermometers are common in alpha- and gamma-proteobacteria. Biol Chem. 2005 Dec;386(12):1279-86. DOI:10.1515/BC.2005.145 |
- Error fetching PMID 14679237:
Links to follow
- http://reuter.mit.edu/dfgwiki wiki about german stipendiats abroad (in german)
- http://anabench.bcm.umontreal.ca/anabench/ nice starting point for computational biology stuff
- http://collections.plos.org/ploscompbiol/tensimplerules.php 10 rule collection for stuff important for scientist
Personal Links
- My strain list
- My qPCR-primer list
- My primer list
- My double strand oligo list
- primer concentrations
- blogger profile
- CiteULike library
- Protein gel and Western
OWW
- How to present research well
- Reviews
- OpenWetWare:Ideas
- /sandbox
- Affinity purification of antibodies
- ChIP-Chip E. coli
- Baby cell column
- Sodium azide
- Chromosomal DNA isolation from E. coli
- Temperature mixing formula
- Methylation analysis with qPCR
- Hardcore PubMeding (advanced PubMed searching)
- OriC/ter ratio determination
- Cell cycle analysis
- Berkmen lab
- Mazel lab
Lost and found protocols:
