User:Tk/Notebook/MF/2009/03/21: Difference between revisions

From OpenWetWare
< User:Tk‎ | Notebook‎ | MF‎ | 2009‎ | 03
Jump to navigationJump to search
(Autocreate 2009/03/21 Entry for User:Tk/Notebook/MF)
 
 
(5 intermediate revisions by the same user not shown)
Line 6: Line 6:
| colspan="2"|
| colspan="2"|
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==Title==
==RNAse H genes; Genomic DNA prep for Illumina sequencing==
* Content
Kochiwa07 reports on the variety of RNAse H genes in bacterial species.  He finds three major categories, RNAseH-I, RNAseH-II, and RNAse-III.  MF has RNAseH-I and RNAse-II, but the -I has additional domain dsRHbd (double stranded RNA helix binding domain).  The genes in MF for these two are:
 
* -I (with dsRHbd) is Mfl475, and is apparently essential
* -III is Mfl537, and has been knocked out several times.
 
Made new 1161 plates - no antibiotic
 
Choose GF1, W20, Me. entomophilum strain as the ones for next gen sequencing.
 
Prepare seed cultures of L1, GF1, PP1, W12, M. entomophilum
 
 
 





Latest revision as of 12:10, 8 May 2012

Mesoplasma florum simplification <html><img src="/images/9/94/Report.png" border="0" /></html> Main Page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

RNAse H genes; Genomic DNA prep for Illumina sequencing

Kochiwa07 reports on the variety of RNAse H genes in bacterial species. He finds three major categories, RNAseH-I, RNAseH-II, and RNAse-III. MF has RNAseH-I and RNAse-II, but the -I has additional domain dsRHbd (double stranded RNA helix binding domain). The genes in MF for these two are:

  • -I (with dsRHbd) is Mfl475, and is apparently essential
  • -III is Mfl537, and has been knocked out several times.

Made new 1161 plates - no antibiotic

Choose GF1, W20, Me. entomophilum strain as the ones for next gen sequencing.

Prepare seed cultures of L1, GF1, PP1, W12, M. entomophilum