User:Timothee Flutre/Notebook/Postdoc/2012/07/25 - Revision history

Timothee Flutre: /* About Emacs */ disable line truncating in org-mode

Timothee Flutre — Thu, 14 Mar 2013 13:25:19 GMT

About Emacs: disable line truncating in org-mode

←Older revision		Revision as of 13:25, 14 March 2013
Line 105:		Line 105:
	'(("breaklines")))		'(("breaklines")))
	(setq org-log-done 'time)		(setq org-log-done 'time)
		+	(setq org-startup-truncated nil)
	;; END config org-mode		;; END config org-mode
	</nowiki>		</nowiki>

Timothee Flutre: /* About Emacs */ comment custom install of AUCTeX

Timothee Flutre — Sun, 10 Feb 2013 13:55:56 GMT

About Emacs: comment custom install of AUCTeX

←Older revision		Revision as of 13:55, 10 February 2013
Line 71:		Line 71:

	;; START config AUCTeX		;; START config AUCTeX
-	(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/auctex.el" nil t t)	+	;;(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/auctex.el" nil t t)
-	(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/preview-latex.el" nil t t)	+	;;(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/preview-latex.el" nil t t)
-	(add-to-list 'load-path "/home/tflutre/src/LATEX_PKGS/AUCTEX")	+	;;(add-to-list 'load-path "/home/tflutre/src/LATEX_PKGS/AUCTEX")
	(setq TeX-auto-save t)		(setq TeX-auto-save t)
	(setq TeX-parse-self t)		(setq TeX-parse-self t)

Timothee Flutre: /* About Emacs */ add default loading of ESS

Timothee Flutre — Sun, 10 Feb 2013 13:53:54 GMT

About Emacs: add default loading of ESS

←Older revision		Revision as of 13:53, 10 February 2013
Line 60:		Line 60:

	;; START config ESS		;; START config ESS
-	(load "~/src_ext_nb/ESS/ess-12.04-4/lisp/ess-site")	+	(require 'ess-site)
		+	;;(load "~/src_ext_nb/ESS/ess-12.04-4/lisp/ess-site")

	;; tips from http://emacswiki.org/emacs/EmacsSpeaksStatistics		;; tips from http://emacswiki.org/emacs/EmacsSpeaksStatistics

Timothee Flutre: /* About Emacs */ add emacs -nw

Timothee Flutre — Mon, 07 Jan 2013 14:26:35 GMT

About Emacs: add emacs -nw

←Older revision		Revision as of 14:26, 7 January 2013
Line 115:		Line 115:
	* '''Tips''':		* '''Tips''':
	** from the office computer, log interactively to a cluster node, launch <code>emacs --daemon</code> and keep the terminal open indefinitely; then access this session from any computer, e.g. a laptop, with <code>emacsclient -t</code>		** from the office computer, log interactively to a cluster node, launch <code>emacs --daemon</code> and keep the terminal open indefinitely; then access this session from any computer, e.g. a laptop, with <code>emacsclient -t</code>
		+	** especially useful with [http://en.wikipedia.org/wiki/PuTTY PuTTY] on Windows, launch emacs so that its window is the terminal itself, via <code>emacs -nw</code>

	<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->		<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->

Timothee Flutre: /* About Emacs */ add emacs --daemon

Timothee Flutre — Mon, 07 Jan 2013 14:24:30 GMT

About Emacs: add emacs --daemon

←Older revision		Revision as of 14:24, 7 January 2013
Line 112:		Line 112:
	** [http://orgmode.org/) org-mode]		** [http://orgmode.org/) org-mode]
	** [http://www.gnu.org/software/auctex/ AUCTeX]		** [http://www.gnu.org/software/auctex/ AUCTeX]
		+
		+	* '''Tips''':
		+	** from the office computer, log interactively to a cluster node, launch <code>emacs --daemon</code> and keep the terminal open indefinitely; then access this session from any computer, e.g. a laptop, with <code>emacsclient -t</code>

	<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->		<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->

Timothee Flutre: /* About Emacs */ display date and time in mode line

Timothee Flutre — Wed, 24 Oct 2012 01:19:32 GMT

About Emacs: display date and time in mode line

←Older revision		Revision as of 01:19, 24 October 2012
Line 20:		Line 20:
	;; Your init file should contain only one such instance.		;; Your init file should contain only one such instance.
	;; If there is more than one, they won't work right.		;; If there is more than one, they won't work right.
		+	'(column-number-mode t) ;; in the mode line
		+	'(size-indication-mode t) ;; in the mode line
		+	'(display-time-mode 1) ;; in the mode line
		+	'(display-time-day-and-date t) ;; in the mode line
		+	'(display-time-24hr-format t) ;; in the mode line
	'(case-fold-search t)		'(case-fold-search t)
-	~~'(column-number-mode t)~~
	'(current-language-environment "UTF-8")		'(current-language-environment "UTF-8")
	'(default-input-method "rfc1345")		'(default-input-method "rfc1345")

Timothee Flutre: /* About Emacs */ add option to use listings in org-mode

Timothee Flutre — Fri, 27 Jul 2012 14:41:23 GMT

About Emacs: add option to use listings in org-mode

←Older revision		Revision as of 14:41, 27 July 2012
Line 96:		Line 96:
	(require 'org-latex)		(require 'org-latex)
	(add-to-list 'org-export-latex-packages-alist '("" "listings"))		(add-to-list 'org-export-latex-packages-alist '("" "listings"))
		+	(setq org-export-latex-listings t)
	(setq org-export-latex-listings-options		(setq org-export-latex-listings-options
	'(("breaklines")))		'(("breaklines")))

Timothee Flutre: /* About Emacs */ improve loading ess

Timothee Flutre — Thu, 26 Jul 2012 15:41:20 GMT

About Emacs: improve loading ess

←Older revision		Revision as of 15:41, 26 July 2012
Line 34:		Line 34:

	(setq inhibit-startup-message t)		(setq inhibit-startup-message t)
		+
		+	(add-to-list 'load-path "~/.emacs.d/")
		+
		+	(setq latex-run-command "pdflatex")

	;; config for C/C++ code		;; config for C/C++ code
Line 40:		Line 44:
	tab-width 2		tab-width 2
	indent-tabs-mode t)		indent-tabs-mode t)
-
-	~~(setq latex-run-command "pdflatex")~~
-
-	~~(add-to-list 'load-path "~/.emacs.d/")~~

	;;--------------------------------------------------------------------		;;--------------------------------------------------------------------
Line 56:		Line 56:

	;; START config ESS		;; START config ESS
-	(~~add-to-list '~~load~~-path~~ "~/~~src~~/~~Emacs_ESS~~/ess-5.13/lisp")	+	(load "~/src_ext_nb/ESS/ess-12.04-4/lisp/ess-site")
-	~~(require '~~ess-site)	+

	;; tips from http://emacswiki.org/emacs/EmacsSpeaksStatistics		;; tips from http://emacswiki.org/emacs/EmacsSpeaksStatistics

Timothee Flutre: /* About Emacs */

Timothee Flutre — Wed, 25 Jul 2012 16:30:15 GMT

About Emacs

←Older revision		Revision as of 16:30, 25 July 2012
Line 8:		Line 8:
	==About Emacs==		==About Emacs==

-	* '''Motivation''': when analyzing data for any research project, it's essential to know well a good text editor. Indeed, it's very efficient to be able to program in several languages (eg. Python, C/C++, R), interact with the shell like in a terminal, manipulate data and plot exploratory analyzes in R, [[all this within the same editor~~]].~~ One such editor is [http://en.wikipedia.org/wiki/Emacs Emacs], and is available on Linux, Mac OS and Windows.	+	* '''Motivation''': when analyzing data for any research project, it's essential to know well a good text editor. Indeed, it's very efficient to be able to program in several languages (eg. Python, C/C++, R), interact with the shell like in a terminal, manipulate data and plot exploratory analyzes in R, ''all this within the same editor''! One such editor is [http://en.wikipedia.org/wiki/Emacs Emacs], and is available on Linux, Mac OS and Windows.

	* '''Configuration''': my own file <nowiki>.emacs</nowiki>		* '''Configuration''': my own file <nowiki>.emacs</nowiki>

Timothee Flutre: /* Entry title */ first version

Timothee Flutre — Wed, 25 Jul 2012 16:29:21 GMT

Entry title: first version

←Older revision		Revision as of 16:29, 25 July 2012
Line 6:		Line 6:
	\| colspan="2"\|		\| colspan="2"\|
	<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->		<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
-	==~~Entry title~~==	+	==About Emacs==
-	* Insert content here...	+

		+	* '''Motivation''': when analyzing data for any research project, it's essential to know well a good text editor. Indeed, it's very efficient to be able to program in several languages (eg. Python, C/C++, R), interact with the shell like in a terminal, manipulate data and plot exploratory analyzes in R, [[all this within the same editor]]. One such editor is [http://en.wikipedia.org/wiki/Emacs Emacs], and is available on Linux, Mac OS and Windows.
		+
		+	* '''Configuration''': my own file <nowiki>.emacs</nowiki>
		+
		+	<nowiki>
		+	;; .emacs
		+
		+	(custom-set-variables
		+	;; custom-set-variables was added by Custom.
		+	;; If you edit it by hand, you could mess it up, so be careful.
		+	;; Your init file should contain only one such instance.
		+	;; If there is more than one, they won't work right.
		+	'(case-fold-search t)
		+	'(column-number-mode t)
		+	'(current-language-environment "UTF-8")
		+	'(default-input-method "rfc1345")
		+	'(global-font-lock-mode t nil (font-lock))
		+	'(show-paren-mode t))
		+	(custom-set-faces
		+	;; custom-set-faces was added by Custom.
		+	;; If you edit it by hand, you could mess it up, so be careful.
		+	;; Your init file should contain only one such instance.
		+	;; If there is more than one, they won't work right.
		+	)
		+
		+	(setq inhibit-startup-message t)
		+
		+	;; config for C/C++ code
		+	(setq c-default-style "bsd"
		+	c-basic-offset 2
		+	tab-width 2
		+	indent-tabs-mode t)
		+
		+	(setq latex-run-command "pdflatex")
		+
		+	(add-to-list 'load-path "~/.emacs.d/")
		+
		+	;;--------------------------------------------------------------------
		+
		+	;; START config Auto-Complete
		+	(require 'auto-complete-config)
		+	(add-to-list 'ac-dictionary-directories "~/.emacs.d//ac-dict")
		+	(ac-config-default)
		+	;; END config Auto-Complete
		+
		+	;;--------------------------------------------------------------------
		+
		+	;; START config ESS
		+	(add-to-list 'load-path "~/src/Emacs_ESS/ess-5.13/lisp")
		+	(require 'ess-site)
		+
		+	;; tips from http://emacswiki.org/emacs/EmacsSpeaksStatistics
		+	(setq ess-eval-visibly-p nil) ;otherwise C-c C-r (eval region) takes forever
		+	(setq ess-ask-for-ess-directory nil) ;otherwise you are prompted each time you start an interactive R session
		+	;; END config ESS
		+
		+	;;--------------------------------------------------------------------
		+
		+	;; START config AUCTeX
		+	(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/auctex.el" nil t t)
		+	(load "/home/tflutre/src/LATEX_PKGS/AUCTEX/preview-latex.el" nil t t)
		+	(add-to-list 'load-path "/home/tflutre/src/LATEX_PKGS/AUCTEX")
		+	(setq TeX-auto-save t)
		+	(setq TeX-parse-self t)
		+	(setq-default TeX-master nil)
		+	(setq TeX-save-query nil)
		+	(setq TeX-PDF-mode t) ;; to have a pdf output for all LaTeX documents
		+	;; END config AUCTeX
		+
		+	;;--------------------------------------------------------------------
		+
		+	;; START config org-mode
		+	(setq load-path (cons "/home/tflutre/src/ORG-MODE/org-7.8.03/lisp" load-path))
		+	(setq load-path (cons "/home/tflutre/src/ORG-MODE/org-7.8.03/contrib/lisp" load-path))
		+	(require 'org-install)
		+	(add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
		+	(global-set-key "\C-cl" 'org-store-link)
		+	(global-set-key "\C-cc" 'org-capture)
		+	(global-set-key "\C-ca" 'org-agenda)
		+	(global-set-key "\C-cb" 'org-iswitchb)
		+	(org-babel-do-load-languages
		+	'org-babel-load-languages
		+	'((R . t)
		+	(sh . t)
		+	(python . t)
		+	))
		+	(setq org-confirm-babel-evaluate nil)
		+	(require 'org-latex)
		+	(add-to-list 'org-export-latex-packages-alist '("" "listings"))
		+	(setq org-export-latex-listings-options
		+	'(("breaklines")))
		+	(setq org-log-done 'time)
		+	;; END config org-mode
		+	</nowiki>
		+
		+	* '''Important packages''':
		+	** [http://ess.r-project.org/ ESS]
		+	** [http://cx4a.org/software/auto-complete/ Auto-Complete]
		+	** [http://orgmode.org/) org-mode]
		+	** [http://www.gnu.org/software/auctex/ AUCTeX]

	<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->		<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->