User:Timothee Flutre/Notebook/Postdoc/2011/11/07: Difference between revisions
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** freely-available [http://adv-r.had.co.nz/ book] for advanced usage | ** freely-available [http://adv-r.had.co.nz/ book] for advanced usage | ||
** [http://www.r-bloggers.com/ aggregator] of R blogs | ** [http://www.r-bloggers.com/ aggregator] of R blogs | ||
** [http://rpubs.com/ publishing platform] of R documents | |||
** [http://gallery.rcpp.org/ gallery] of examples extending R with C++ via [http://www.rcpp.org/ Rcpp] | ** [http://gallery.rcpp.org/ gallery] of examples extending R with C++ via [http://www.rcpp.org/ Rcpp] | ||
** compatible with [http://ess.r-project.org/ ESS] ([https://openwetware.org/wiki/User:Timothee_Flutre/Notebook/Postdoc/2012/07/25 Emacs] mode), besides other IDEs such as [http://www.rstudio.com/ Rstudio] | ** compatible with [http://ess.r-project.org/ ESS] ([https://openwetware.org/wiki/User:Timothee_Flutre/Notebook/Postdoc/2012/07/25 Emacs] mode), besides other IDEs such as [http://www.rstudio.com/ Rstudio] |
Revision as of 14:34, 7 April 2014
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About R
S <- 3 # nb of subgroups V <- 7 # nb of observations z <- matrix(c(0,0,0,0,0,0,0,0,0,1,1,1,1,1,1,0,1,1,1,0,0), nrow=V, ncol=S, byrow=TRUE) myheatmap <- function(z, out.file="") { def.par <- par(no.readonly=TRUE) par(mar=c(4,5,3,2), font=2, font.axis=2, font.lab=2, cex=1.5, lwd=2) if (out.file != "") pdf(out.file) layout(mat=cbind(1, 2), width=c(7,1)) # plot + legend mycol <- rev(heat.colors(4)) image(x=1:NCOL(z), y=1:NROW(z), z=t(z), xlim=0.5+c(0,NCOL(z)), ylim=0.5+c(0,NROW(z)), xlab="", ylab="Observations sorted by cluster", main="Custom heatmap", axes=FALSE, col=mycol) axis(1, 1:NCOL(z), labels=paste("subgroup", 1:NCOL(z)), tick=0) par(mar=c(0,0,0,0)) plot.new() legend("center", legend=sprintf("%.2f", seq(from=min(z), to=max(z), length.out=5)[-1]), fill=mycol, border=mycol, bty="n") if (out.file != "") dev.off() par(def.par) } myheatmap(mydata.sort) |