User:Timothee Flutre/Notebook/CR AGAP/2014/01/17: Difference between revisions

Revision as of 06:00, 26 November 2014

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Bookmarks for grapevine and wine

Motivation: it could be said of grapevine and wine that they are perfect examples of these hybrids about which Bruno Latour wrote a lot. To navigate among wine producers and consumers, researchers and viticulteurs, politicians and journalists, as well as in the midst of berries, genomes, databases, journals, captors and barrels, I made this (never up-to-date) page, hoping it will help me, and maybe others.
Research: mostly public, but not always
- International: IGGP
- Europe: innovine, EPPN (phenotyping network)
  - France:
    - INRA: Montpellier (diversity, genetics, determinants of quality and adaptation to climate change with DAAV, genetic collection with Vassal, oenology with SPO, viticulture and oenology in Pech Rouge), Colmar (resistance, determinants of berry quality and adaptation to climate change for Alsacian wines), Bordeaux (physiology of grafts and berries), Angers (terroir)
    - others: IFV, ISVV, IRSTEA, FranceAgriMer, ACTIA
  - Germany: Julius Kühn-Institut (JKI) in Siebeldingen (breeding and protection)
  - Italy: Udine (IGA, DISA, CRA-VIT), San Michele (FMACH), Padova (which institute?)
  - Spain: CSIC, IMIDRA
  - Hungary: Tokaji Borvidék (W)
- US: Cornell-Geneva (breeding), UC Davis (V&E)
- South America:
  - Chile: INIA La Platina (table grapes)
  - Argentina:
- Australia: CSIRO, AWRI
- China: Northwest A&F
Data:
- genomics: EBI, NCBI (ftp), URGI, Genoscope, IASMA
- genes: VitisNet (pathways), GrapeGenDb (probes annotation), VCTdb (co-expression), GrapeMine (integration), VitisCyc (metabolic pathways)
- genetics: VIVC, EU-Vitis, SIReGal, Reggae
- collections: European network (EURISCO), French Network of Grapevigne Centers (bioweb), USDA (NGR, NCGR), French catalogue, Italy, Germany, Grece, Switzerland
- phenotyping: VIT-PHE, Ephesis, Crop Ontology
- meteo: water deficit (Languedoc-Roussillon)
- phenology: GDR SIP-GECC
- pathogens: EPIcure
- vini-/viti-/agri-culture: OVF (France), FAOSTAT (world), Agreste (France), Agribalyse (France)
- photos: from INRA (new, old), Shutterstock
Institutional:
- International: OIV (Organisation Internationale de la Vigne et du Vin)
- Europe: CPVO (Community Plant Variety Office, OCVV in French)
  - France: INAO (Institut National de l'Origine et de la Qualité), CTNSP (Commission Technique Nationale de Sélection et de Participation), GEVES (Groupe d'Etude et de contrôle des Variétés Et des Semences), INOV (Instance Nationale des Obtentions Végétales), CTPS (Comité Technique Permanent de la Sélection)
Professional:
- International: Castel
- Europe:
  - France: CNAOC (Confédération Nationale des producteurs de vins et eaux de vie de vin à Appellations d’Origine Contrôlées), GiESCO (experts), Dubernet (lab in oenology), Wine Mosaic (original varieties), ICV (conseil, oenologie), VINSEO (fournisseurs), PROMMATA, MABD (bio-dynamie), GRAB (bio), Mercier (pépiniériste), SudVinBio, Vignerons Indépendants, Qualenvi, Vinternet, PleinChamp, WorldwideVineyards (grafting), WineDex (index via auctions), FFL (liège), VEGEPOLYS and Terralia (pôles de compétitivité), FEVS (exporters)
  - Italy: Rauscedo (nurseryman)
- North America:
  - US: Gallo (W), Fruition (sensors)
  - Canada: Lallemand (yeasts)
Press:
- scientific: AJGWR, JISVV
- easy scientific: PAV, Rdoe
- non-scientific:
  - France: Le Rouge et le Blanc, Viti-net, LaVigne-Mag
Amateur:
- wine tasting

@@ Line 25: / Line 25: @@
 ** China: [http://wine.nwsuaf.edu.cn/ Northwest A&F]
 * '''Data''':
-** genomics: [http://plants.ensembl.org/Vitis_vinifera/Info/Index EBI], [http://www.ncbi.nlm.nih.gov/genome/401 NCBI] ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=29760 here also]), [https://urgi.versailles.inra.fr/Species/Vitis URGI], [http://www.genoscope.cns.fr/spip/Vitis-vinifera.html Genoscope], [http://genomics.research.iasma.it/ IASMA]
+** genomics: [http://plants.ensembl.org/Vitis_vinifera/Info/Index EBI], [http://www.ncbi.nlm.nih.gov/genome/401 NCBI] ([ftp://ftp.ncbi.nlm.nih.gov/genomes/Vitis_vinifera/ ftp]), [https://urgi.versailles.inra.fr/Species/Vitis URGI], [http://www.genoscope.cns.fr/spip/Vitis-vinifera.html Genoscope], [http://genomics.research.iasma.it/ IASMA]
 ** genes: [https://www.sdstate.edu/ps/research/vitis/pathways.cfm VitisNet] (pathways), [http://bioinfogp.cnb.csic.es/tools/GrapeGendb/ GrapeGenDb] (probes annotation), [http://vtcdb.adelaide.edu.au/Home.aspx VCTdb] (co-expression), [http://urgi.versailles.inra.fr/GrapeMine/begin.do GrapeMine] (integration), [http://pathways.cgrb.oregonstate.edu/VITIS/class-tree?object=Pathways VitisCyc] (metabolic pathways)
 ** genetics: [http://www.vivc.de/ VIVC], [http://www.eu-vitis.de/index.php EU-Vitis], [https://urgi.versailles.inra.fr/siregal/siregal/card.do?id=5&dbName=siregal&className=genres.administration.GrcImpl SIReGal], [http://bioweb.ensam.inra.fr/reggae/index.php?page=accueil Reggae]

User:Timothee Flutre/Notebook/CR AGAP/2014/01/17: Difference between revisions

Revision as of 06:00, 26 November 2014

Bookmarks for grapevine and wine

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