User:Timothee Flutre/Notebook/CR AGAP/2014/01/10: Difference between revisions

Revision as of 06:10, 5 September 2014

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Bookmarks for INRA, CIRAD, SupAgro, and more

I have been hired by the INRA, in the department "Plant biology and breeding" (BAP in French), but the laboratory in which I am working, AGAP, depends on several research institutes: INRA, CIRAD and SupAgro. The primary goal of such an institutional organization is to build a lab to "encompass a wide range of skills and be a leading platform for applied plant biology and genetics", which is a good endevaour. However, on a daily basis, this is particularly challenging as information is scattered around, and each person needs its own access rights to the tools used by each institute. This web page hence aims at providing a list of links to navigate easily among all sources of information.

Institutions:
- INRA: web site, intranet, directory
  - BAP: web site, intranet
  - centre of Montpellier: web site, intranet, map
- CIRAD: web site, intranet (authentification if outside CIRAD), directory, map
- SupAgro: web site, intranet, map
- AGAP: web site, intranet

Tools:
- SupAgro:
  - email: Horde
  - bookings for team "vigne" (rooms, videoproj, etc), room MISTEA/AGAP, cars
  - mailing lists: Sympa (umr-agap-daav, umr-agap-ge2pop, umr-davem-bioinfo)
  - library
  - VPN client: Fortinet
- INRA (notably via the DSI)
  - mailing lists: Sympa (such as the one on genomic selection, NIRS)
  - shared online calendars: YaZiba
  - shared large files: FileX
  - files in cloud: YazibaDrive
  - spaces for collaborative projects: Silverpeas
  - spaces for collaborative editing: Xwiki
  - libraries
  - maths-info
  - elearning of the Formation Permanente
  - PEPI IBIS (bioinfo and biostat)
  - missions: Ulysse
  - congés: HR Access
  - bug tracker: Mantis
- CIRAD:
  - mailing lists: Sympa (biostatsagap)
  - personal online space: Espace perso
  - spaces for collaborative projects: Alfresco
  - shared large files: FileX
  - online talks: AmphiTV (possibly live)
  - VPN client: Fortinet
- visioconference for academics: SeeVogh, Jitsi

Computing platforms: especially high performance computing resources (HPC, that is computer clusters)
- URGI: web site, get account (need fixed IP or not, then ssh -Y tflutre@saruman.versailles.inra.fr), support (urgi-support@versailles.inra.fr)
- SouthGreen: web site, get account (need VPN, can also be open via the Fortinet client from SupAgro via ./forticlientsslvpn_cli --server vpn-montpellier.cirad.fr:443 --vpnuser timothee.flutre, and then ssh -Y flutre@marmadais.cirad.fr), support, use qlogin -q bigmem.q to get X11 forwarding from compute nodes
- Migale: web site, get account (then ssh -Y tflutre@migale.jouy.inra.fr), support (help.migale@jouy.inra.fr)
- GenOuest: web site, get account (need fixed IP, then ssh -Y tflutre@genocluster2.irisa.fr), support (support@genouest.org)

Miscellaneous:
- portail juridique de l'INRA, Agro Valo Méditerranée
- GNU/Linux distribution by an INRA lab: Debian PAPPSO
- Séminaire de Probabilités et Statistique de Montpellier (mailing list semstat)
- Computational Biology Institute of Montpellier (IBC): mailing list ibc-all
- Labo d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM): mailing lists
- Société Française de Bio-Informatique (SFBI): mailing list ("liste bioinfo")
- mailing lists on "evolution": evolmontp, evolfrance, evoldir
- mailing list of the International Grape Genome Program (IGGP)

@@ Line 13: / Line 13: @@
 *** BAP: [http://www.bap.inra.fr/en web site], [https://intranet6.inra.fr/bap intranet]
 *** centre of Montpellier: [http://www.montpellier.inra.fr/ web site], [https://intranet.montpellier.inra.fr/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map]
-** [https://en.wikipedia.org/wiki/Centre_de_coop%C3%A9ration_internationale_en_recherche_agronomique_pour_le_d%C3%A9veloppement CIRAD]: [http://www.cirad.fr/en/home-page web site], [https://intranet.cirad.fr/ intranet], [http://intranet-search.cirad.fr/agents directory], [http://www.cirad.fr/var/cirad/storage/original/application/05038b0c55a79c3d0f2f420aa7025e4d.swf map]
+** [https://en.wikipedia.org/wiki/Centre_de_coop%C3%A9ration_internationale_en_recherche_agronomique_pour_le_d%C3%A9veloppement CIRAD]: [http://www.cirad.fr/en/home-page web site], [https://intranet.cirad.fr/ intranet] ([https://sso.cirad.fr/login authentification] if outside CIRAD), [http://intranet-search.cirad.fr/agents directory], [http://www.cirad.fr/var/cirad/storage/original/application/05038b0c55a79c3d0f2f420aa7025e4d.swf map]
 ** [https://fr.wikipedia.org/wiki/Centre_international_d%27%C3%A9tudes_sup%C3%A9rieures_en_sciences_agronomiques SupAgro]: [http://www.supagro.fr/web/en/ web site], [https://www.supagro.fr/web/intranet/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map]
 ** AGAP: [http://umr-agap.cirad.fr/en web site], [https://intranet-umr-agap.cirad.fr/ intranet]
@@ Line 20: / Line 20: @@
 ** SupAgro:
 *** email: [https://web.supagro.inra.fr/horde3/imp/login.php Horde]
-*** [https://www1.montpellier.inra.fr/intranet/intracampus/reservations/R_Tableau_reservation.php?type=salle_arbo réservation salles réunion]
+*** [http://www.montpellier.inra.fr/intranet/intracampus/reservations/viti/ bookings] for team "vigne" (rooms, videoproj, etc), [https://www1.montpellier.inra.fr/intranet/intracampus/reservations/R_Tableau_reservation.php?type=salle_arbo room MISTEA/AGAP], [https://reservations-vehicules.inra.fr/ cars]
-*** mailing lists: [https://listes.supagro.inra.fr/sympa/ Sympa] (umr-davem, umr-davem-bioinfo)
+*** mailing lists: [https://listes.supagro.inra.fr/sympa/ Sympa] (umr-agap-daav, umr-agap-ge2pop, umr-davem-bioinfo)
 *** [http://web.supagro.inra.fr/pmb/opac_css/index.php library]
+*** VPN client: [https://web.supagro.inra.fr/intranet/BAO/Forti/ Fortinet]
 ** INRA (notably via the [https://intranet6.inra.fr/systemes-information/Offre-de-service DSI])
-*** mailing lists: [https://listes.inra.fr/sympa Sympa] (such as the one on [https://listes.inra.fr/sympa/info/selection-genomique-inra genomic selection])
+*** mailing lists: [https://listes.inra.fr/sympa Sympa] (such as the one on [https://listes.inra.fr/sympa/info/selection-genomique-inra genomic selection], [https://listes.inra.fr/sympa/info/nirs NIRS])
 *** shared online calendars: [https://agenda.inra.fr/ YaZiba]
 *** shared large files: [https://echange-fichiers.inra.fr/ FileX]
+*** files in cloud: [https://intranet6.inra.fr/systemes-information/Offre-de-service/Communication-et-echanges/Partage-securise-de-fichiers-cloud?ticket=ST-387973-tfJxa2hv5PQYceEgObWr-cas YazibaDrive]
 *** spaces for collaborative projects: [https://collaboratif.inra.fr/silverpeas Silverpeas]
 *** spaces for collaborative editing: [https://wiki.inra.fr/ Xwiki]
@@ Line 35: / Line 37: @@
 *** missions: [https://intranet.inra.fr/Produits/ulysse/Ulysse/ Ulysse]
 *** congés: [https://rh-production.s2i.inra.fr/hra-space/portal HR Access]
+*** bug tracker: [https://intranet.inra.fr/mantis-INRA/login_page.php Mantis]
 ** CIRAD:
+*** mailing lists: [http://sympa.cirad.fr/sympa/ Sympa] (biostatsagap)
 *** personal online space: [https://espace-perso.cirad.fr/c/portal/login Espace perso]
 *** spaces for collaborative projects: [https://collaboratif.cirad.fr/share/page/repository Alfresco]
 *** shared large files: [http://filex.cirad.fr/ FileX]
 *** online talks: [http://amphi-tv.cirad.fr/ AmphiTV] (possibly live)
-** visioconference for academics: [http://evo.renater.fr/ SeeVogh]
+*** VPN client: [ftp://ftp.cirad.fr/cirad/fortinet/ Fortinet]
+** visioconference for academics: [http://evo.renater.fr/ SeeVogh], [https://jitsi.visio.renater.fr/ Jitsi]
 * '''Computing platforms:''' especially high performance computing resources (HPC, that is computer clusters)
 ** URGI: [https://urgi.versailles.inra.fr/ web site], [https://urgi.versailles.inra.fr/Platform/User-support get account] (need fixed IP or [https://acces-versailles.versailles.inra.fr/ not], then ssh -Y tflutre@saruman.versailles.inra.fr), support (urgi-support@versailles.inra.fr)
-** SouthGreen: [http://www.southgreen.fr/ web site], [http://www.southgreen.fr/content/computer-facilities get account] (need [https://vpn-montpellier.cirad.fr/ VPN], then ssh -Y flutre@marmadais.cirad.fr), [http://www.southgreen.fr/content/report-problem support]
+** SouthGreen: [http://www.southgreen.fr/ web site], [http://www.southgreen.fr/content/computer-facilities get account] (need [https://vpn-montpellier.cirad.fr/ VPN], can also be open via the Fortinet client from SupAgro via ./forticlientsslvpn_cli --server vpn-montpellier.cirad.fr:443 --vpnuser timothee.flutre, and then ssh -Y flutre@marmadais.cirad.fr), [http://www.southgreen.fr/content/report-problem support], use qlogin -q bigmem.q to get X11 forwarding from compute nodes
 ** Migale: [http://migale.jouy.inra.fr/ web site], [http://migale.jouy.inra.fr/?q=ressources get account] (then ssh -Y tflutre@migale.jouy.inra.fr), support (help.migale@jouy.inra.fr)
 ** GenOuest: [http://www.genouest.org/ web site], [http://genoweb1.irisa.fr/AppliESIB/access/access-en.php get account] (need fixed IP, then ssh -Y tflutre@genocluster2.irisa.fr), support (support@genouest.org)
 * '''Miscellaneous:'''
+** [https://www.abcontrats.inra.fr/ portail juridique] de l'INRA, [http://www.supagro.fr/web/pages/?idl=19&page=536 Agro Valo Méditerranée]
 ** GNU/Linux distribution by an INRA lab: [https://2ic.pepi.inra.fr/index.php/poste-de-travail/systeme-dexploitation/520-distribution-debian-customisee-pour-une-utilisation-bureautique Debian PAPPSO]
 ** [http://www.math.univ-montp2.fr/SPIP/sem.php3?a=programme&sem=13 Séminaire de Probabilités et Statistique] de Montpellier (mailing list [http://www.math.univ-montp2.fr/~pudlo/Semstat/_.html semstat])

User:Timothee Flutre/Notebook/CR AGAP/2014/01/10: Difference between revisions

Revision as of 06:10, 5 September 2014

Bookmarks for INRA, CIRAD, SupAgro, and more

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