User:Timothee Flutre

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==Contact Info==
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Timothee Flutre (an artistic interpretation)]]
[[Image:OWWEmblem.png|thumb|right|Timothee Flutre (an artistic interpretation)]]
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*Timothee Flutre
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* Timothee Flutre
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*University of Chicago (Department of Human Genetics) - INRA (Department of Plant Breeding)
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* University of Chicago (Department of Human Genetics) - INRA (Department of Plant Breeding)
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*Address 1: CLSC, 5801 S Ellis Ave, Chicago, IL 60637, USA
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* Address 1: CLSC, 5801 S Ellis Ave, Chicago, IL 60637, USA
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*Address 2: URGI, Route de Saint Cyr, Versailles, 78026, France
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* Address 2: URGI, Route de Saint Cyr, Versailles, 78026, France
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*[[Special:Emailuser/Timothee Flutre|Email me through OpenWetWare]]
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* [[Special:Emailuser/Timothee Flutre|Email me through OpenWetWare]]
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I work in the [[Stephens lab]] at the University of Chicago.  I learned about [[OpenWetWare]] thanks to friends participating in iGEM a few years ago, and I've joined because OpenWetWare seems to be a great project, and I like the idea of promoting more openness in science. Thus I would like to give it a try.
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I am doing a postdoc with [http://stephenslab.uchicago.edu/ Matthew Stephens] at the University of Chicago.  I learned about [[OpenWetWare]] thanks to friends participating in iGEM a few years ago, and I've joined because OpenWetWare seems to be a great project, and I like the idea of promoting more openness in science. Thus I would like to give it a try.
==Education==
==Education==
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* 2010, PhD, Université Paris Diderot
* 2010, PhD, Université Paris Diderot
* 2007, MS, Université Paris Diderot
* 2007, MS, Université Paris Diderot
==Research interests==
==Research interests==
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# Genetics and genomics
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# Interest 1
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# Transposable elements
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# Interest 2
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# Statistical modeling (especially Bayesian)
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# Interest 3
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==Publications==
==Publications==
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* In search of lost trajectories: Recovering the diversification of transposable elements.
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* ''In search of lost trajectories: Recovering the diversification of transposable elements.''
*: '''Flutre T''', Permal E, Quesneville H.
*: '''Flutre T''', Permal E, Quesneville H.
*: Mob Genet Elements. 2011 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/22016865 22016865])
*: Mob Genet Elements. 2011 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/22016865 22016865])
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* Considering transposable element diversification in de novo annotation approaches.
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* ''Considering transposable element diversification in de novo annotation approaches.''
*: '''Flutre T''', Duprat E, Feuillet C, Quesneville H.
*: '''Flutre T''', Duprat E, Feuillet C, Quesneville H.
*: PLoS One. 2011 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/21304975 21304975])
*: PLoS One. 2011 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/21304975 21304975])
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* Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.
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* ''Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.''
*: d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, '''Flutre T''', Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P, Feyereisen R.
*: d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, '''Flutre T''', Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P, Feyereisen R.
*: Proc Natl Acad Sci U S A. 2010 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/20388903 20388903])
*: Proc Natl Acad Sci U S A. 2010 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/20388903 20388903])
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* Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
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* ''Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.''
*: Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, '''Flutre T''', Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.
*: Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, '''Flutre T''', Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.
*: Nat. Biotechnol. 2008 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/18660804 18660804])
*: Nat. Biotechnol. 2008 (PMID=[http://www.ncbi.nlm.nih.gov/pubmed/18660804 18660804])

Revision as of 19:03, 4 November 2011

Contents

Contact Info

Timothee Flutre (an artistic interpretation)
Timothee Flutre (an artistic interpretation)
  • Timothee Flutre
  • University of Chicago (Department of Human Genetics) - INRA (Department of Plant Breeding)
  • Address 1: CLSC, 5801 S Ellis Ave, Chicago, IL 60637, USA
  • Address 2: URGI, Route de Saint Cyr, Versailles, 78026, France
  • Email me through OpenWetWare

I am doing a postdoc with Matthew Stephens at the University of Chicago. I learned about OpenWetWare thanks to friends participating in iGEM a few years ago, and I've joined because OpenWetWare seems to be a great project, and I like the idea of promoting more openness in science. Thus I would like to give it a try.

Education

  • 2010, PhD, Université Paris Diderot
  • 2007, MS, Université Paris Diderot

Research interests

  1. Genetics and genomics
  2. Transposable elements
  3. Statistical modeling (especially Bayesian)

Publications

  • In search of lost trajectories: Recovering the diversification of transposable elements.
    Flutre T, Permal E, Quesneville H.
    Mob Genet Elements. 2011 (PMID=22016865)
  • Considering transposable element diversification in de novo annotation approaches.
    Flutre T, Duprat E, Feuillet C, Quesneville H.
    PLoS One. 2011 (PMID=21304975)
  • Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.
    d'Alençon E, Sezutsu H, Legeai F, Permal E, Bernard-Samain S, Gimenez S, Gagneur C, Cousserans F, Shimomura M, Brun-Barale A, Flutre T, Couloux A, East P, Gordon K, Mita K, Quesneville H, Fournier P, Feyereisen R.
    Proc Natl Acad Sci U S A. 2010 (PMID=20388903)
  • Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita.
    Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Ségurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P.
    Nat. Biotechnol. 2008 (PMID=18660804)

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