User:Susana Simancas G.: Difference between revisions

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==Contact Info==


[[Image:Susaspim.png|300px|left]]
[[Image:Susaspim.png|300px|left]]
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[[User: Susana Simancas G.|Susana M. Simancas Giraldo]]<br>
[[User: Susana Simancas G.|Susana M. Simancas Giraldo]]<br><br>
:Ph.D. Student<br>
:Current: Ph.D. Candidate - Uni Bremen, Germany<br>
:Biophysics UniAndes: M.Sc. Biological Sciences<br><br>


'''You can find me at:'''
'''You can find me at:'''<br><br>
s-simanc@uniandes.edu.co<br>
[https://www.marum.de/en/education-career/GLOMAR/Susana-Simancas.html GLOMAR-MARUM]<br><br>
[http://www.openwetware.org/wiki/biophysics Biophysics lab wiki]<br>
sussim@uni-bremen.de<br>
[http://www.openwetware.org/wiki/UA_Biophysics:Microscopy SPIM Microscopy]<br><br><br><br><br><br><br><br>
s-simanc@uniandes.edu.co<br><br><br><br><br><br><br><br><br><br><br><br>


==Summary==  
==Summary==  


During my currently Ph.D. training, I’ve been researching soft coral calcification since my main research project is to evaluate how ocean acidification impacts this particular physiological process.
[[Image:esclerito.gif|280px|right|border|''Pterogorgia guadalupensis'' sclerite - SPIM Microscopy 3D Reconstruction.]]


To know what the responses of these corals to acidified environments are, my area of expertise includes the development and standardization of techniques that implements principally epifluorescence microscopy and SPIM microscopy (Selective Plane Illumination Microscopy), for quantifying calcium carbonate incorporated by corals into structures called sclerites, which are believed to be particularly sensitive to ocean acidification effects.<br>
<br>
<br>
During my current Ph.D. training, I’ve been researching on how ocean acidification affects particular physiological processes on soft corals.
 
On my previous M.Sc. research in the Biophysics and BIOMMAR groups at the University of los Andes, we implemented interdisciplinary approaches in order to investigate
the responses of soft corals and their larvae, to acidified environments. In particular, calcification responses and larvae stages development under stress conditions.
My area of expertise in the Biophysics group included, the development and standardization of techniques in epifluorescence microscopy and SPIM microscopy (Selective Plane Illumination Microscopy), for quantifying calcium carbonate incorporated by corals into structures called sclerites, which are believed to be particularly sensitive to ocean acidification effects, as well as observations in vivo of larvae growth, surface attachment and sclerite production, relevant to coral further recruitment.<br><br>


==Research Groups==
==Research Groups==
Marine Ecology - [https://www.uni-bremen.de/en/marine-ecology.html BreMarE]<br>


Biología Molecular Marina - [http://biommar.uniandes.edu.co/Biommar/Susana_simancas.html BIOMMAR]<br>
Biología Molecular Marina - [http://biommar.uniandes.edu.co/Biommar/Susana_simancas.html BIOMMAR]<br>
Line 43: Line 54:
Mathematical and Computational Biology - [http://biomac.uniandes.edu.co/?lang=en BIOMAC]<br>
Mathematical and Computational Biology - [http://biomac.uniandes.edu.co/?lang=en BIOMAC]<br>


==Event Participations==
==Education==
 
'''University of Bremen - Germany'''<br>
2018-Current<br>
Ph.D. Candidate Marine Ecology<br><br>


Video-Poster Presentation<br>
'''University of Los Andes - Colombia'''<br>
'''Evaluando el efecto de la acidificación oceánica en la calcificación neta del octocoral ''Pterogorgia guadalupensis'' mediante microscopía de fluorescencia. '''<br>
2012-2017<br>
Diciembre 2014<br>
M.Sc. Biological Sciences<br><br>
[http://www.congresocolombianozoologia.org Congreso Colombiano de Zoología]<br>
 
Cartagena, Colombia<br><br>
'''University of Los Andes - Colombia'''<br>
2008-2012<br>
B.Sc. Biology<br>
 
==Short Training Internships==


Poster Presentation<br>
'''Validation of the fluorescense quantification method for measurement of gross calcification in Octocorals. ''' <br>
October 2013<br>
[http://eubias2013.irbbarcelona.org EUBIAS: European Bioimage Analysis Symposium]<br>
IRB Barcelona, España. <br><br>


Poster Presentation<br>
'''Modelamiento Biomecánico de la Fragmentación y Calcificación en Corales Bambú (Isididae: ''Keratoisis sp.'') ''' <br>
October 2011<br>
[http://www.sociedadcolombianadefisica.org.co/pag/eventos2011.php XXIV Congreso Nacional de Física]<br>
Bogotá D.C, Colombia<br><br>


Poster Presentation <br>
'''Lability and plasticity in calcification patterns of bamboo corals (Keratoisis: Isididae) explained by simulated hydrodynamic forces.''' <br>
June 2011<br>
[http://www.oklahomascienceteachersassociation.org/?p=2793 Evolution 2011]<br>
Oklahoma, Oklahoma City, USA<br><br>


Academical Acknowledgement<br>
'''Monitoring Ocean Acidification and its Effects on Calcifying Marine Organisms''' <br>
[http://www.cco.gov.co/premiov_s.html Henry Von Prahl Prize]<br>
September 2013 <br>
[http://cedepesca.net/colombia-xv-seminario-nacional-de-ciencias-y-tecnologias-del-mar/ SENALMAR: XV Seminario Nacional de Ciencia y Tecnología del Mar]<br>
Santa Marta, Colombia. <br>
'''Honorific Mention'''<br>


==Education==


'''University of the Andes - Colombia'''<br>
2012-2017<br>
[http://cienciasbiologicas.uniandes.edu.co/index.php/programas/posgrado/doctorado PhD, Biological Sciences]<br><br>


'''University of the Andes - Colombia'''<br>
2008-2012<br>
[http://www.uniandes.edu.co/component/content/article/656-about-uniandes BSc Biology]<br>


==Short Training Internships==


'''Advanced Technology Institute in Life Sciences''' - [http://www.itav-recherche.fr/index.php/en/ BSc Biology ITAV]<br>
'''Advanced Technology Institute in Life Sciences''' - [http://www.itav-recherche.fr/index.php/en/ ITAV Centre Pierre Potier]<br>
September 2013<br>
September 2013<br>
'''ECOS Nord program'''<br>
'''ECOS Nord program'''<br>
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&bull; Spanish - Mother tongue<br>
&bull; Spanish - Mother tongue<br>
&bull; English - Advanced<br>
&bull; English - Advanced<br>
&bull; French - Medium<br>
&bull; German - Intermediate<br>
&bull; Japanese - Medium<br>
&bull; French - Intermediate<br>
&bull; Japanese - Basic<br>


==Research interests==
==Research interests==


&bull; Marine Biology – Ocean Acidification<br>
&bull; Marine Biology – Octocoral Eco-physiology<br>
&bull; Marine Biology – Coral Calcification<br>
&bull; Biophysics – Fluorescense Microscopy<br>
&bull; Biophysics – Fluorescense Microscopy<br>
&bull; Biophysics – SPIM Microscopy<br>
&bull; Biophysics – SPIM Microscopy<br>
&bull; Marine Biology – Coral Calcification<br>
&bull; Marine Biology – Ocean Acidification<br>
&bull; Computer Science – Digital image processing <br>
&bull; Computer Science – Digital image processing <br>


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[[Biophysics|Return to UA Biophysics]]<br>

Latest revision as of 11:39, 9 June 2020


Susana M. Simancas Giraldo

Current: Ph.D. Candidate - Uni Bremen, Germany
Biophysics UniAndes: M.Sc. Biological Sciences

You can find me at:

GLOMAR-MARUM

sussim@uni-bremen.de
s-simanc@uniandes.edu.co











Summary

Pterogorgia guadalupensis sclerite - SPIM Microscopy 3D Reconstruction.
Pterogorgia guadalupensis sclerite - SPIM Microscopy 3D Reconstruction.



During my current Ph.D. training, I’ve been researching on how ocean acidification affects particular physiological processes on soft corals.

On my previous M.Sc. research in the Biophysics and BIOMMAR groups at the University of los Andes, we implemented interdisciplinary approaches in order to investigate the responses of soft corals and their larvae, to acidified environments. In particular, calcification responses and larvae stages development under stress conditions. My area of expertise in the Biophysics group included, the development and standardization of techniques in epifluorescence microscopy and SPIM microscopy (Selective Plane Illumination Microscopy), for quantifying calcium carbonate incorporated by corals into structures called sclerites, which are believed to be particularly sensitive to ocean acidification effects, as well as observations in vivo of larvae growth, surface attachment and sclerite production, relevant to coral further recruitment.

Research Groups

Marine Ecology - BreMarE

Biología Molecular Marina - BIOMMAR

Biophysics Research Group - Biofísica Uniandes

Mathematical and Computational Biology - BIOMAC

Education

University of Bremen - Germany
2018-Current
Ph.D. Candidate Marine Ecology

University of Los Andes - Colombia
2012-2017
M.Sc. Biological Sciences

University of Los Andes - Colombia
2008-2012
B.Sc. Biology

Short Training Internships

Advanced Technology Institute in Life Sciences - ITAV Centre Pierre Potier
September 2013
ECOS Nord program
Light sheet microscopy (SPIM) – IP3D Team

Languages

• Spanish - Mother tongue
• English - Advanced
• German - Intermediate
• French - Intermediate
• Japanese - Basic

Research interests

• Marine Biology – Ocean Acidification
• Marine Biology – Octocoral Eco-physiology
• Marine Biology – Coral Calcification
• Biophysics – Fluorescense Microscopy
• Biophysics – SPIM Microscopy
• Computer Science – Digital image processing

Return to UA Biophysics