User:Steven J. Koch/Notebook/Kochlab

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Revision as of 10:26, 10 September 2009 by Steven J. Koch (Talk | contribs)

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Notebook overview

This is Steve Koch's public notebook. By necessity, I also have a private wiki notebook. Topics are likely to be optical tweezers control software, DNA unzipping data analysis, and others.

Our lab website

/Listing of all pages

Notes

Also see other public notebooks from our lab

User:Steven J. Koch/Notebook/Kochlab/2011/06/14/Comparing Pranav's unzipping to simulation, success
User:Steven J. Koch/Notebook/Kochlab/2011/06/14
User:Steven J. Koch/Notebook/Kochlab/2011/06/08/PCR With Priyanka
User:Steven J. Koch/Notebook/Kochlab/2011/06/08
User:Steven J. Koch/Notebook/Kochlab/2011/06/06/Tethering with Pranav and Priyanka
User:Steven J. Koch/Notebook/Kochlab/2011/06
User:Steven J. Koch/Notebook/Kochlab/2011
User:Steven J. Koch/Notebook/Kochlab/2011/06/06
User:Steven J. Koch/Notebook/Kochlab/2010/09/23/Preliminary Tobacco Seed Study, Deuterium and Breasticles
User:Steven J. Koch/Notebook/Kochlab/2010/09/23
User:Steven J. Koch/Notebook/Kochlab/2010/09/08/Deuterium-depleted water tobacco seeds experiment planning . . Categories: Deuterium | Tobacco seeds
User:Steven J. Koch/Notebook/Kochlab/2010/09/08
User:Steven J. Koch/Notebook/Kochlab/2010/09/05/Biochem (2003) Hackney et al ADP release, processivity, neck linker spacer . . Categories: Kinesin | Kinesin Neck Linker | Kinesin Neck Linker Reference
User:Steven J. Koch/Notebook/Kochlab/2010/09/05/Cell (2008) Yildiz, Tomishige, Gennerich, Vale strain coordinates stepping . . Categories: Kinesin | Kinesin Neck Linker | Kinesin Neck Linker Reference
User:Steven J. Koch/Notebook/Kochlab/2010/09/05
User:Steven J. Koch/Notebook/Kochlab/2010/09/04/Curr Bio (2010) Shastry, Hancock neck linker kinesin1,2 . . Categories: Kinesin | Kinesin Neck Linker | Kinesin Neck Linker Reference
User:Steven J. Koch/Notebook/Kochlab/2010/09/04/Curr Bio (2009) Muthukrishnan, Hancock et al kinesin-2 processivity . . Categories: Kinesin | Kinesin Neck Linker | Kinesin Neck Linker Reference
User:Steven J. Koch/Notebook/Kochlab/2010/09
User:Steven J. Koch/Notebook/Kochlab/2010/09/04
User:Steven J. Koch/Notebook/Kochlab/2010/08/19/Larry's rate constant work
User:Steven J. Koch/Notebook/Kochlab/2010/08
User:Steven J. Koch/Notebook/Kochlab/2010/08/19
User:Steven J. Koch/Notebook/Kochlab/2010/05/13/Cool data plots and CC0, open data licensing
User:Steven J. Koch/Notebook/Kochlab/2010/05/13
User:Steven J. Koch/Notebook/Kochlab/2010/05/11/Analysis of all data, array of data pools
User:Steven J. Koch/Notebook/Kochlab/2010/05/11
User:Steven J. Koch/Notebook/Kochlab/2010/05/04/Planning for data automation
User:Steven J. Koch/Notebook/Kochlab/2010/05/04
User:Steven J. Koch/Notebook/Kochlab/2010/05/03/Tracking 80% D2O, 81%O-18, and 0% (alpha)...peaks!
User:Steven J. Koch/Notebook/Kochlab/2010/05/03
User:Steven J. Koch/Notebook/Kochlab/2010/05
User:Steven J. Koch/Notebook/Kochlab/2010/04/30/Tracking 18% 18-oxygen water results
User:Steven J. Koch/Notebook/Kochlab/2010/04/30
User:Steven J. Koch/Notebook/Kochlab/2010/04/29/Andy's Heavy hydrogen, heavy oxygen water data
User:Steven J. Koch/Notebook/Kochlab/2010/04/29
User:Steven J. Koch/Notebook/Kochlab/2010/04/15/Gliding assay analysis with Larry and Andy
User:Steven J. Koch/Notebook/Kochlab/2010/04/15
User:Steven J. Koch/Notebook/Kochlab/2010/04/09/Looking at kinesin data with Larry and Andy
User:Steven J. Koch/Notebook/Kochlab/2010/04/09
User:Steven J. Koch/Notebook/Kochlab/2010/04
User:Steven J. Koch/Notebook/Kochlab/2010/03/04/Tweezers, laser issue
User:Steven J. Koch/Notebook/Kochlab/2010/03/04
User:Steven J. Koch/Notebook/Kochlab/2010/03/03/Laser problem at high power
User:Steven J. Koch/Notebook/Kochlab/2010/03/03
User:Steven J. Koch/Notebook/Kochlab/2010/03
User talk:Steven J. Koch/Notebook/Kochlab/2010/01/29/Lab notebook model with FriendFeed
User:Steven J. Koch/Notebook/Kochlab/2010/02/02/Shotgun DNA mapping mindmap
User:Steven J. Koch/Notebook/Kochlab/2010/02/02/Kinesin modeling mindmapping with Larry
User:Steven J. Koch/Notebook/Kochlab/2010/02/02
User:Steven J. Koch/Notebook/Kochlab/2010/02
User:Steven J. Koch/Notebook/Kochlab/2010/01/30/Running challenge
User:Steven J. Koch/Notebook/Kochlab/2010/01/30
User:Steven J. Koch/Notebook/Kochlab/2010/01/29/Lab notebook model with FriendFeed
User:Steven J. Koch/Notebook/Kochlab/2010/01/29/Looking into mindmapping software
User:Steven J. Koch/Notebook/Kochlab/2010/01/29
User:Steven J. Koch/Notebook/Kochlab/2010/01/28/Mindmap Larry Tracking Paper
User:Steven J. Koch/Notebook/Kochlab/2010/01/28
User:Steven J. Koch/Notebook/Kochlab/2010/01
User:Steven J. Koch/Notebook/Kochlab/2010
User talk:Steven J. Koch/Notebook/Kochlab/2009/09/15/EarI pBR322
User:Steven J. Koch/Notebook/Kochlab/2009/09/15/EarI pBR322
User:Steven J. Koch/Notebook/Kochlab/2009/09/15
User:Steven J. Koch/Notebook/Kochlab/2009/09/11/Websites for R
User:Steven J. Koch/Notebook/Kochlab/2009/09/11
User:Steven J. Koch/Notebook/Kochlab/2009/09
User:Steven J. Koch/Notebook/Kochlab/2009/08/28/SapI Oligo Order
User:Steven J. Koch/Notebook/Kochlab/2009/08/28
User:Steven J. Koch/Notebook/Kochlab/2009/08/27/Possible unzipping constructs
User:Steven J. Koch/Notebook/Kochlab/2009/08/27
User:Steven J. Koch/Notebook/Kochlab/2009/08/12/Power modulator
User:Steven J. Koch/Notebook/Kochlab/2009/08/12
User:Steven J. Koch/Notebook/Kochlab/2009/08/11/Noise
User:Steven J. Koch/Notebook/Kochlab/2009/08/11/Create Offset Array
User:Steven J. Koch/Notebook/Kochlab/2009/08/11
User:Steven J. Koch/Notebook/Kochlab/2009/08/07/tethering with Ant
User:Steven J. Koch/Notebook/Kochlab/2009/08/07
User:Steven J. Koch/Notebook/Kochlab/2009/08/05/Fork tethers
User:Steven J. Koch/Notebook/Kochlab/2009/08/05
User:Steven J. Koch/Notebook/Kochlab/2009/08/04/Fork tethers
User:Steven J. Koch/Notebook/Kochlab/2009/08/04
User:Steven J. Koch/Notebook/Kochlab/2009/08/03/Autoreport 98
User:Steven J. Koch/Notebook/Kochlab/2009/08/03
User:Steven J. Koch/Notebook/Kochlab/2009/08
User talk:Steven J. Koch/Notebook/Kochlab/2009/07/29/Feedback tweaking, noise, FTC
User:Steven J. Koch/Notebook/Kochlab/2009/07/29/Feedback tweaking, noise, FTC
User:Steven J. Koch/Notebook/Kochlab/2009/07/29
User:Steven J. Koch/Notebook/Kochlab/2009/07/28/Feedback tweaking
User:Steven J. Koch/Notebook/Kochlab/2009/07/28
User:Steven J. Koch/Notebook/Kochlab/2009/07/17/DTRA Abstracts/Brigette
User:Steven J. Koch/Notebook/Kochlab/2009/07/17/DTRA Abstracts/Andy
User:Steven J. Koch/Notebook/Kochlab/2009/07/17/DTRA Abstracts
User:Steven J. Koch/Notebook/Kochlab/2009/07/17
User:Steven J. Koch/Notebook/Kochlab/2009/07/16/Feedback modules, tethering
User:Steven J. Koch/Notebook/Kochlab/2009/07/16
User talk:Steven J. Koch/Notebook/Kochlab/2009/07/15/dsDNA tethering
User:Steven J. Koch/Notebook/Kochlab/2009/07/15/power modulation
User:Steven J. Koch/Notebook/Kochlab/2009/07/15/dsDNA tethering
User:Steven J. Koch/Notebook/Kochlab/2009/07/15/Feedback modules
User:Steven J. Koch/Notebook/Kochlab/2009/07/15
User:Steven J. Koch/Notebook/Kochlab/2009/07/14/Power modulation
User:Steven J. Koch/Notebook/Kochlab/2009/07/14/More oscilloscope computer
User:Steven J. Koch/Notebook/Kochlab/2009/07/14
User:Steven J. Koch/Notebook/Kochlab/2009/07/13/Setting up oscilloscope, camera computer
User:Steven J. Koch/Notebook/Kochlab/2009/07/13/half micron beads; possible tethering
User:Steven J. Koch/Notebook/Kochlab/2009/07/13
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/Summary of the day
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/More calibration again
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/More calibration
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/QPD debugging
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/trap calibration things
User:Steven J. Koch/Notebook/Kochlab/2009/07/10/Power spectrum
User:Steven J. Koch/Notebook/Kochlab/2009/07/10
User:Steven J. Koch/Notebook/Kochlab/2009/07/09/Feedback 96, Power Spectrum Fixed
User:Steven J. Koch/Notebook/Kochlab/2009/07/09/Beginnings of OT Calibration
User:Steven J. Koch/Notebook/Kochlab/2009/07/09/Feedback 96, Memory Leak
User:Steven J. Koch/Notebook/Kochlab/2009/07/09/Feedback 96, Piezo debugging
User:Steven J. Koch/Notebook/Kochlab/2009/07/09
User:Steven J. Koch/Notebook/Kochlab/2009/07/08/Feedback 96, QPD
User:Steven J. Koch/Notebook/Kochlab/2009/07/08
User:Steven J. Koch/Notebook/Kochlab/2009/07/06/Feedback 96 Looptime debugging
User:Steven J. Koch/Notebook/Kochlab/2009/07/06
User:Steven J. Koch/Notebook/Kochlab/2009/07/05/Feedback 96 subroutine stuff
User:Steven J. Koch/Notebook/Kochlab/2009/07/05
User:Steven J. Koch/Notebook/Kochlab/2009/07/04/Feedback 96 debugging
User:Steven J. Koch/Notebook/Kochlab/2009/07/04
User:Steven J. Koch/Notebook/Kochlab/2009/07/03/Popcorn in Liquid Nitrogen
User:Steven J. Koch/Notebook/Kochlab/2009/07/03/Witnessing Andy's first tweezing
User:Steven J. Koch/Notebook/Kochlab/2009/07/03/Feedback96 Completion of DAQmx conversion
User:Steven J. Koch/Notebook/Kochlab/2009/07/03
User:Steven J. Koch/Notebook/Kochlab/2009/07
User:Steven J. Koch/Notebook/Kochlab/2009/06/30/Feedback 96, stop condition etc.
User:Steven J. Koch/Notebook/Kochlab/2009/06/30
User:Steven J. Koch/Notebook/Kochlab/2009/06/29/Feedback 96 Debugging/Richard Yeh stop condition C dcode
User:Steven J. Koch/Notebook/Kochlab/2009/06/29/Feedback 96 Debugging
User:Steven J. Koch/Notebook/Kochlab/2009/06/29
User:Steven J. Koch/Notebook/Kochlab/2009/06/26/Feedback96 -- moving to visual source safe/compile warnings
User:Steven J. Koch/Notebook/Kochlab/2009/06/26/Feedback96 -- moving to visual source safe
User:Steven J. Koch/Notebook/Kochlab/2009/06/26
User:Steven J. Koch/Notebook/Kochlab/2009/06/25/Coherent 1064 characterization
User:Steven J. Koch/Notebook/Kochlab/2009/06/25
User:Steven J. Koch/Notebook/Kochlab/2009/06/24/Coherent 1064 nm installation
User:Steven J. Koch/Notebook/Kochlab/2009/06/24
User:Steven J. Koch/Notebook/Kochlab/2009/06/23/Kinesin bulk activity assays
User:Steven J. Koch/Notebook/Kochlab/2009/06/23
User:Steven J. Koch/Notebook/Kochlab/2009/06/22/Some old unzipping popping data--EcoRI calcium, EDTA
User:Steven J. Koch/Notebook/Kochlab/2009/06/22/VSS Software Shadow
User:Steven J. Koch/Notebook/Kochlab/2009/06/22/Convert many files, OT data conversion thinking
User:Steven J. Koch/Notebook/Kochlab/2009/06/22
User:Steven J. Koch/Notebook/Kochlab/2009/06/19/Feedback96 Actual Testing
User:Steven J. Koch/Notebook/Kochlab/2009/06/19/Source Code Control
User:Steven J. Koch/Notebook/Kochlab/2009/06/19/Cytoskeleton order . . Categories: Kinesin | Microtubules
User:Steven J. Koch/Notebook/Kochlab/2009/06/19
User:Steven J. Koch/Notebook/Kochlab/2009/06/18/More Feedback96
User:Steven J. Koch/Notebook/Kochlab/2009/06/18
User:Steven J. Koch/Notebook/Kochlab/2009/06/17/Feedback software/How to convert strings to channel variants
User:Steven J. Koch/Notebook/Kochlab/2009/06/17/Feedback software
User:Steven J. Koch/Notebook/Kochlab/2009/06/17
User:Steven J. Koch/Notebook/Kochlab/2009/03/18/Feedback program . . Categories: Incomplete Private Wiki Transfer | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/03/18
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Next steps
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Ridding main program of RLP
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Copying major changes to all modules
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Continued feedback tweaking/Need to figure out what to do with interstep timing . . Categories: Fix | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Continued feedback tweaking/Need to replace RLP GetBitResolution VI . . Categories: Fix | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Continued feedback tweaking . . Categories: Incomplete Private Wiki Transfer
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Feedback program tweaking/feedback loop delays . . Categories: Fix | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/03/04/Feedback program tweaking . . Categories: Incomplete Private Wiki Transfer | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/03/04
User:Steven J. Koch/Notebook/Kochlab/2009/02/19/Getting Feedback0B Working . . Categories: Incomplete Private Wiki Transfer | Optical Tweezers | Optical Tweezers Control Software
User:Steven J. Koch/Notebook/Kochlab/2009/02
User:Steven J. Koch/Notebook/Kochlab/2009/02/19
User:Steven J. Koch/Notebook/Kochlab/2009/06/16/Motility assays/Need to order . . Categories: KochLab Inventory
User:Steven J. Koch/Notebook/Kochlab/2009/06/16/Motility assays
User:Steven J. Koch/Notebook/Kochlab/2009/06/16/Andor Luca Installation on -daq2/compilation warnings
User:Steven J. Koch/Notebook/Kochlab/2009/06/16/Kochlab-03, Feedback0B
User:Steven J. Koch/Notebook/Kochlab/2009/06/16/Andor Luca Installation on -daq2
User:Steven J. Koch/Notebook/Kochlab/2009/06/16
User:Steven J. Koch/Notebook/Kochlab/2009/06/15/Feedback on Kochlab-daq2
User:Steven J. Koch/Notebook/Kochlab/2009/06/15/Livefeed on Kochlab-daq2
User:Steven J. Koch/Notebook/Kochlab/2009/06/15/TRITC (Rhodamine) and regular tubulin
User:Steven J. Koch/Notebook/Kochlab/2009/06/15/Kochlab-daq2 setup
User:Steven J. Koch/Notebook/Kochlab/2009/06/15
User:Steven J. Koch/Notebook/Kochlab/2009/06/14/Inventory testing
User:Steven J. Koch/Notebook/Kochlab/2009/06/14
User:Steven J. Koch/Notebook/Kochlab/2009/06/12/Freezer, fridge box inventory
User:Steven J. Koch/Notebook/Kochlab/2009/06/12
User:Steven J. Koch/Notebook/Kochlab/2009/06/08/Stepping statistics
User:Steven J. Koch/Notebook/Kochlab/2009/06/08
User:Steven J. Koch/Notebook/Kochlab/2009/06/05/New antifade components
User:Steven J. Koch/Notebook/Kochlab/2009/06/05
User:Steven J. Koch/Notebook/Kochlab/2009/06/04
User:Steven J. Koch/Notebook/Kochlab/2009/06/01/More FITC Microtubules, thinking about kinesin assay
User:Steven J. Koch/Notebook/Kochlab/2009/06/01
User:Steven J. Koch/Notebook/Kochlab/2009/06
User:Steven J. Koch/Notebook/Kochlab/2009/05/26/FITC Microtubules with antifade
User:Steven J. Koch/Notebook/Kochlab/2009/05
User:Steven J. Koch/Notebook/Kochlab/2009/05/26
User:Steven J. Koch/Notebook/Kochlab/2008/07/16/Lambda DNA visualization
User:Steven J. Koch/Notebook/Kochlab/2008/07/16/investigating hiv RT
User:Steven J. Koch/Notebook/Kochlab/2008/07/16
User:Steven J. Koch/Notebook/Kochlab/2008/07/17/HIV Reverse Transcriptase DNA Tethering
User:Steven J. Koch/Notebook/Kochlab/2008/07/17
User:Steven J. Koch/Notebook/Kochlab/2008/07
User:Steven J. Koch/Notebook/Kochlab/2008
User:Steven J. Koch/Notebook/Kochlab/2009/04/18/Osmolyte unzipping data 2003/030124 Journal Entries
User:Steven J. Koch/Notebook/Kochlab/2009/04/18/Osmolyte unzipping data 2003/030121 Journal Entries
User:Steven J. Koch/Notebook/Kochlab/2009/04/18/Osmolyte unzipping data 2003 . . Categories: Osmotic Stress | SJK 090420 Presentation
User:Steven J. Koch/Notebook/Kochlab/2009/04/18
User:Steven J. Koch/Notebook/Kochlab/2009/04/08
User:Steven J. Koch/Notebook/Kochlab/2009/04/07/Convert many files
User:Steven J. Koch/Notebook/Kochlab/2009/04/07
User:Steven J. Koch/Notebook/Kochlab/2009/04/02/Autoreport software
User:Steven J. Koch/Notebook/Kochlab/2009/04/02
User:Steven J. Koch/Notebook/Kochlab/2009/04/01/Data analysis VIs
User:Steven J. Koch/Notebook/Kochlab/2009/04/01
User:Steven J. Koch/Notebook/Kochlab/2009/04
User:Steven J. Koch/Notebook/Kochlab/2009/03/29/Looking at old unzipping data/Example of all journal files
User:Steven J. Koch/Notebook/Kochlab/2009/03/29/Looking at old unzipping data
User:Steven J. Koch/Notebook/Kochlab/2009/03/29
User:Steven J. Koch/Notebook/Kochlab/2009/03
User:Steven J. Koch/Notebook/Kochlab/2009
User:Steven J. Koch/Notebook/Kochlab/Listing of all pages
User:Steven J. Koch/Notebook/Kochlab/Entry Base

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