User:Richard C. Cronn: Difference between revisions
| (20 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Contact Info== | ===Contact Info=== | ||
[[Image:RCC_field.jpg|thumb|right|Cronn in the field]] | [[Image:RCC_field.jpg|thumb|right|Cronn in the field (artistic impression)]] | ||
Richard Cronn<br> | |||
Pacific Northwest Research Station<br> | |||
USDA Forest Service<br> | |||
3200 SW Jefferson Way<br> | |||
Corvallis, OR 97330 USA | |||
*[[Special:Emailuser/Richard C. Cronn|Email me through OpenWetWare]] | *[[Special:Emailuser/Richard C. Cronn|Email me through OpenWetWare]] | ||
I lead research in the Forest Plant Molecular Genetics lab (a.k.a., the [[Cronn Lab]]), which is part of the Genetics and Silviculture Team in the Landscape and Watershed Management Program at the [http://www.fs.fed.us/pnw/| PNW Research Station.] We're on [[OpenWetWare]] to share lab and informatics protocols that are directed primarily at using ultra-high throughput short read sequencers in population genetics and genomics applications. | I lead research in the Forest Plant Molecular Genetics lab (a.k.a., the [[Cronn Lab]]), which is part of the Genetics and Silviculture Team in the Landscape and Watershed Management Program at the [http://www.fs.fed.us/pnw/| PNW Research Station.] We're on [[OpenWetWare]] to share lab and informatics protocols that are directed primarily at using ultra-high throughput short read sequencers in population genetics and genomics applications. | ||
==Education== | ---- | ||
===Education=== | |||
* 1997, PhD, Iowa State University, Ames, IA, USA | * 1997, PhD, Iowa State University, Ames, IA, USA | ||
* 1991, MSc, University of Montana, Missoula, MT, USA | * 1991, MSc, University of Montana, Missoula, MT, USA | ||
* 1986, BS, Drake University, Des Moines, IA, USA | * 1986, BS, Drake University, Des Moines, IA, USA | ||
==Research Interests== | ---- | ||
===Research Interests=== | |||
* Molecular basis of climatic sensing and adaptation in plants | |||
* Plant population and landscape genetics | |||
* Chloroplast genome evolution | |||
---- | |||
===A Few Articles That Provide Examples Of Our Research=== | |||
'''Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/ | |||
)'''<br> | |||
'''A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation'''<br> | |||
''BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137<br> | |||
Glenn T Howe, Jianbin Yu, [[user: Brian J. Knaus| Brian J. Knaus]], [[user: Richard C. Cronn | Rich Cronn]], et al.<br> | |||
[http://www.biomedcentral.com/1471-2164/14/137/abstract| URL] [http://www.biomedcentral.com/content/pdf/1471-2164-14-137.pdf | PDF reprint] | |||
'''Targeted enrichment strategies for next-generation plant biology'''<br> | |||
''American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356 <br> | |||
[[user: Richard C. Cronn | Rich Cronn]], [[user: Brian J. Knaus| Brian J. Knaus]], [[User:Aaron_Liston| Aaron Liston]], Peter J. Maughan, et al. <br> | |||
[http://www.amjbot.org/content/99/2/291.long URL] [http://www.amjbot.org/content/99/2/291.full.pdf+html | PDF reprint] | |||
'''Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from ''Pinus'''''<br> | |||
''BMC Evolutionary Biology 2012, 12:100, doi:10.1186/1471-2148-12-100<br> | |||
[[user: Matthew Parks| Matt Parks]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]] | |||
[http://www.biomedcentral.com/1471-2148/12/100 URL] [http://www.biomedcentral.com/content/pdf/1471-2148-12-100.pdf | PDF reprint] | |||
'''Multiplexed microsatellite recovery using massively parallel sequencing'''<br> | |||
''Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x<br> | |||
[[user: Tara N. Jennings | Tara Jennings]], [[user: Brian J. Knaus| Brian J. Knaus]], Thomas D. Mullens, Susan M. Haig, [[user: Richard C. Cronn | Rich Cronn]]<br> | |||
[http://www.treesearch.fs.fed.us/pubs/39939 URL] [http://www.fs.fed.us/pnw/pubs/journals/pnw_2011_jennings001.pdf | PDF reprint] | |||
'''Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore'''<br> | |||
''BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10<br> | |||
[[user: Brian J. Knaus| Brian J. Knaus]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]], Kristine Pilgrim, Michael K. Schwartz<br> | |||
[http://www.biomedcentral.com/1472-6785/11/10 URL] [http://www.biomedcentral.com/content/pdf/1472-6785-11-10.pdf | PDF reprint] | |||
'''Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines'''<br> | |||
''Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x<br> | |||
Justen B. Whittall, John V. Syring, [[user: Matthew Parks| Matt Parks]], Jason Buenrostro, Cindy Dick, [[User:Aaron_Liston| Aaron Liston]],[[user: Richard C. Cronn | Rich Cronn]]<br> | |||
[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2009.04474.x/abstract URL][http://www.treesearch.fs.fed.us/pubs/36321 | PDF reprint] | |||
'''Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes | |||
'''<br> | |||
''BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84 <br> | |||
[[user: Matthew Parks| Matt Parks]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]]<br> | |||
[http://www.biomedcentral.com/1741-7007/7/84 URL] [http://www.biomedcentral.com/content/pdf/1741-7007-7-84.pdf | PDF reprint] | |||
===Other Articles, Not Peer Reviewed=== | |||
'''Scientists probe genetic component of climate-hardy species'''<br> | |||
''Land Letter'' April 28, 2011<br> | |||
[http://www.eenews.net/public/Landletter/2011/04/28/4 URL] | |||
---- | |||
==Useful links== | ===Useful links=== | ||
*[[OpenWetWare:Welcome|Introductory tutorial]] | *[[OpenWetWare:Welcome|OpenWetWare Introductory tutorial]] | ||
*[[Help|OpenWetWare help pages]] | *[[Help|OpenWetWare help pages]] | ||
*[http://www.fs.fed.us/pnw/olympia/silv/wfts/ Western Forest Transcriptome Observatory] | |||
*[http://www.milkweedgenome.org/ Milkweed Genome Project] | |||
Revision as of 01:09, 5 March 2013
Contact Info
Richard Cronn
Pacific Northwest Research Station
USDA Forest Service
3200 SW Jefferson Way
Corvallis, OR 97330 USA
I lead research in the Forest Plant Molecular Genetics lab (a.k.a., the Cronn Lab), which is part of the Genetics and Silviculture Team in the Landscape and Watershed Management Program at the PNW Research Station. We're on OpenWetWare to share lab and informatics protocols that are directed primarily at using ultra-high throughput short read sequencers in population genetics and genomics applications.
Education
- 1997, PhD, Iowa State University, Ames, IA, USA
- 1991, MSc, University of Montana, Missoula, MT, USA
- 1986, BS, Drake University, Des Moines, IA, USA
Research Interests
- Molecular basis of climatic sensing and adaptation in plants
- Plant population and landscape genetics
- Chloroplast genome evolution
A Few Articles That Provide Examples Of Our Research
Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/
)
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137
Glenn T Howe, Jianbin Yu, Brian J. Knaus, Rich Cronn, et al.
URL | PDF reprint
Targeted enrichment strategies for next-generation plant biology
American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356
Rich Cronn, Brian J. Knaus, Aaron Liston, Peter J. Maughan, et al.
URL | PDF reprint
Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus
BMC Evolutionary Biology 2012, 12:100, doi:10.1186/1471-2148-12-100
Matt Parks, Rich Cronn, Aaron Liston
URL | PDF reprint
Multiplexed microsatellite recovery using massively parallel sequencing
Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x
Tara Jennings, Brian J. Knaus, Thomas D. Mullens, Susan M. Haig, Rich Cronn
URL | PDF reprint
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10
Brian J. Knaus, Rich Cronn, Aaron Liston, Kristine Pilgrim, Michael K. Schwartz
URL | PDF reprint
Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x
Justen B. Whittall, John V. Syring, Matt Parks, Jason Buenrostro, Cindy Dick, Aaron Liston, Rich Cronn
URL| PDF reprint
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84
Matt Parks, Rich Cronn, Aaron Liston
URL | PDF reprint
Other Articles, Not Peer Reviewed
Scientists probe genetic component of climate-hardy species
Land Letter April 28, 2011
URL
