User:Puja Mody/Notebook/Chem 571: Gold Nanoparticles/2012/10/17 - Revision history

Puja Mody: /* Conclusions */

Puja Mody — Wed, 21 Nov 2012 23:50:53 GMT

Conclusions

←Older revision		Revision as of 23:50, 21 November 2012
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	==Conclusions==		==Conclusions==
-	* The Fluorimeter was not working today and attempts to use the Uv-Vis in a makeshift manner in order to calculate the luminescence emitted were unsuccessful. As a result this experiment has been placed on hold until the equipment is once again working.	+	* The Fluorimeter was not working today and attempts to use the Uv-Vis in a makeshift manner in order to calculate the luminescence emitted were unsuccessful. This was done by blocking the source lamp so that only the emitted light could be measured. However, data collection by this method was not possible as no signal was detected. As a result this experiment has been placed on hold until the equipment is once again working.
-	* The duration of lab was used to make new Au/BSA solutions at the same original 14 concentrations and the lysozyme stock solution was also made. The lysozyme will be used to nucleate the AuNPs in the future. I was not present in lab during this time. For information regarding the making of the Au/BSA solutions please consult Michaels Notebook. For instructions and calculations regarding the lysozyme stock please look at Mary's Notebook.	+	* The duration of lab was used to make new Au/BSA solutions at the same original 14 concentrations and the lysozyme stock solution was also made. The lysozyme will be used to nucleate the AuNPs in the future. I was not present in lab during this time. For information regarding the making of the Au/BSA solutions please consult Michaels Notebook. For instructions and calculations regarding the lysozyme stock please look at [[User:Mary Mendoza/Notebook/CHEM 571 Experimental Biological Chemistry I/2012/10/17\| Mary's Notebook.]]

Puja Mody: /* Procedure */

Puja Mody — Wed, 21 Nov 2012 23:47:03 GMT

Procedure

←Older revision		Revision as of 23:47, 21 November 2012
Line 25:		Line 25:

	As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]		As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]
-	* 'Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes.'	+	* "Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes."
-	* 'Gel was observed under UV lamp to see if PCR product has been successfully produced.'	+	* "Gel was observed under UV lamp to see if PCR product has been successfully produced."

	==Conclusions==		==Conclusions==

Puja Mody: /* Procedure */

Puja Mody — Wed, 21 Nov 2012 23:46:25 GMT

Procedure

←Older revision		Revision as of 23:46, 21 November 2012
Line 25:		Line 25:

	As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]		As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]
-	* "Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes."	+	* 'Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes.'
-	* "Gel was observed under UV lamp to see if PCR product has been successfully produced."	+	* 'Gel was observed under UV lamp to see if PCR product has been successfully produced.'

	==Conclusions==		==Conclusions==

Puja Mody: /* Procedure */

Puja Mody — Wed, 21 Nov 2012 23:46:02 GMT

Procedure

←Older revision		Revision as of 23:46, 21 November 2012
Line 13:		Line 13:

	==Procedure==		==Procedure==
-	*Two solutions were created. In each one, 1μL of DPN1 was added to 45μL K110A (f) and K110A (r) plasmid respectively. These plasmid solutions were the same ones made and placed in the thermocycler [[User:Puja Mody/Notebook/Chem 571: Gold Nanoparticles/2012/10/16\| Yesterday]]	+	*Two solutions were created. In each one, 1μL of DPN1 was added to 45μL K110A (f) and K110A (r) plasmid respectively. These plasmid solutions were the same ones made and placed in the thermocycler [[User:Puja Mody/Notebook/Chem 571: Gold Nanoparticles/2012/10/16\| Yesterday]]. The two new solutions were then placed on a heat block at 37°C for 60 minutes.
-	*The two new solutions were then placed on a heat block at 37°C for 60 minutes.	+
	*Next, 5μL of the two solutions K110A (f) and K110A (r) plasmids were combined with 1μL of 6X Gel Loading Dye (blue). the 6μL solutions were then loaded into an agarose gel for gel electrophoresis.		*Next, 5μL of the two solutions K110A (f) and K110A (r) plasmids were combined with 1μL of 6X Gel Loading Dye (blue). the 6μL solutions were then loaded into an agarose gel for gel electrophoresis.

Line 26:		Line 25:

	As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]		As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]
-	** Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes.	+	* "Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes."
-	* Gel was observed under UV lamp to see if PCR product has been successfully produced.	+	* "Gel was observed under UV lamp to see if PCR product has been successfully produced."

	==Conclusions==		==Conclusions==

Puja Mody: /* Procedure */

Puja Mody — Wed, 24 Oct 2012 19:56:50 GMT

Procedure

←Older revision		Revision as of 19:56, 24 October 2012
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	**1.23 grams of agarose was mixed with 35mL of 1X TAE buffer (buffer made of Tris base, Acetic acid and Ethylenediaminetetraacetic acid (EDTA) and then microwaved for 45 seconds. This solution was then quickly poured into the Gel electrophoresis and was given approximately 20-30 minutes to solidify. 1X TAE buffer was then poured into the gel electrophoresis container.		**1.23 grams of agarose was mixed with 35mL of 1X TAE buffer (buffer made of Tris base, Acetic acid and Ethylenediaminetetraacetic acid (EDTA) and then microwaved for 45 seconds. This solution was then quickly poured into the Gel electrophoresis and was given approximately 20-30 minutes to solidify. 1X TAE buffer was then poured into the gel electrophoresis container.
	** A DNA ladder was made by mixing 5uL DNA ladder with 1uL of 6X gel loading dye blue. The Plasmids with different ADA mutations were then loaded in the gel. There are a total of 3 different plasmids each one with a f (forward) and an r (reverse). Therefore, between the entire lab, there were 6 plasmids. They were loaded in gel in the following order:		** A DNA ladder was made by mixing 5uL DNA ladder with 1uL of 6X gel loading dye blue. The Plasmids with different ADA mutations were then loaded in the gel. There are a total of 3 different plasmids each one with a f (forward) and an r (reverse). Therefore, between the entire lab, there were 6 plasmids. They were loaded in gel in the following order:
-	DNA ladder ~~-->~~ E34K ~~-->~~ E34A ~~-->~~ E34A ~~-->~~ K110A ~~-->~~ K110A ~~-->~~ E34K	+
		+	***DNA ladder, E34K, E34A , E34A, K110A, K110A, E34K
		+
	** The Gel electrophoresis was run at 85 volts for 1 hour.		** The Gel electrophoresis was run at 85 volts for 1 hour.

Puja Mody at 01:50, 24 October 2012

Puja Mody — Wed, 24 Oct 2012 01:50:04 GMT

←Older revision		Revision as of 01:50, 24 October 2012
Line 13:		Line 13:

	==Procedure==		==Procedure==
		+	*Two solutions were created. In each one, 1μL of DPN1 was added to 45μL K110A (f) and K110A (r) plasmid respectively. These plasmid solutions were the same ones made and placed in the thermocycler [[User:Puja Mody/Notebook/Chem 571: Gold Nanoparticles/2012/10/16\| Yesterday]]
		+	*The two new solutions were then placed on a heat block at 37°C for 60 minutes.
		+	*Next, 5μL of the two solutions K110A (f) and K110A (r) plasmids were combined with 1μL of 6X Gel Loading Dye (blue). the 6μL solutions were then loaded into an agarose gel for gel electrophoresis.

		+	*Gel Electrophoresis
		+	**1.23 grams of agarose was mixed with 35mL of 1X TAE buffer (buffer made of Tris base, Acetic acid and Ethylenediaminetetraacetic acid (EDTA) and then microwaved for 45 seconds. This solution was then quickly poured into the Gel electrophoresis and was given approximately 20-30 minutes to solidify. 1X TAE buffer was then poured into the gel electrophoresis container.
		+	** A DNA ladder was made by mixing 5uL DNA ladder with 1uL of 6X gel loading dye blue. The Plasmids with different ADA mutations were then loaded in the gel. There are a total of 3 different plasmids each one with a f (forward) and an r (reverse). Therefore, between the entire lab, there were 6 plasmids. They were loaded in gel in the following order:
		+	DNA ladder --> E34K --> E34A --> E34A --> K110A --> K110A --> E34K
		+	** The Gel electrophoresis was run at 85 volts for 1 hour.

		+	As I was not present for the next segment of the experiment, these steps and information was taken from [[User:Keyun Wang/Notebook/Experimental Biological Chemistry I/2012/10/17\| Keyun Wang's Notebook]]
		+	** Gel was stained in TAE buffer with ethidium bromide. The gel, as well as 20uL of 12.3mg/mL ethidium bromide were added into 100mL of TAE buffer and mixed for 5 minutes. Gel was then transferred to TAE buffer without ethidium bromide to rinse for 5 minutes.
		+	* Gel was observed under UV lamp to see if PCR product has been successfully produced.

	==Conclusions==		==Conclusions==

Puja Mody at 01:35, 24 October 2012

Puja Mody — Wed, 24 Oct 2012 01:35:34 GMT

←Older revision		Revision as of 01:35, 24 October 2012
Line 6:		Line 6:
	\| colspan="2"\|		\| colspan="2"\|
	<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->		<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
-	==~~Entry title~~==	+	==Gel Electrophoresis==
-	* ~~Insert content here~~...	+
		+	==Goals==
		+	* Run the plasmids through a gel electrophoresis.
		+	* Complete HRP chemiluminescence assay
		+
		+	==Procedure==
		+
		+
		+
		+	==Conclusions==
		+	* The Fluorimeter was not working today and attempts to use the Uv-Vis in a makeshift manner in order to calculate the luminescence emitted were unsuccessful. As a result this experiment has been placed on hold until the equipment is once again working.
		+	* The duration of lab was used to make new Au/BSA solutions at the same original 14 concentrations and the lysozyme stock solution was also made. The lysozyme will be used to nucleate the AuNPs in the future. I was not present in lab during this time. For information regarding the making of the Au/BSA solutions please consult Michaels Notebook. For instructions and calculations regarding the lysozyme stock please look at Mary's Notebook.
		+

Puja Mody: Autocreate 2012/10/17 Entry for User:Puja_Mody/Notebook/Chem_571:_Gold_Nanoparticles

Puja Mody — Wed, 24 Oct 2012 01:28:12 GMT

Autocreate 2012/10/17 Entry for User:Puja_Mody/Notebook/Chem_571:_Gold_Nanoparticles

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==Entry title==
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