User:Mary Mendoza/Notebook/CHEM572 Exp. Biological Chemistry II/2013/01/30

Revision as of 12:18, 5 February 2013 by Mary Mendoza (Talk | contribs)

Project name

Molecular Fingerprinting and Docking of Compounds to the ADA active site

From the assigned computer, a new terminal was created from either of the following steps:

1. Finder > Services > New terminal at folder

-or-

2. press the provided shortcut key F5

Then enter $maestro to open the suite.
Draw the molecule on the workspace area. Modifications can be made through the Edit panel > build > fragments > atom properties. Sponge the drawn molecule for clarity.
To save the molecule, create this entry on the project table -or- from the workspace option > project entry > name and create the project and then save.
The next step is to put the molecule under energy minimization to find a stable energetically conformation.