User:Marnix H. Medema

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*Marnix H. Medema
*Marnix H. Medema
*University of Groningen
*University of Groningen
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*Kerklaan 30
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*Nijenborgh 7
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*9751NN
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*9747 AG Groningen
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*Haren, The Netherlands
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*The Netherlands
*[[Special:Emailuser/Marnix H. Medema|Email me through OpenWetWare]]
*[[Special:Emailuser/Marnix H. Medema|Email me through OpenWetWare]]
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==Education==
==Education==
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<!--Include info about your educational background-->
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* 2009 - present: Ph.D. Student, University of Groningen
* 2008, M.Sc. Biomolecular Sciences, University of Groningen
* 2008, M.Sc. Biomolecular Sciences, University of Groningen
* 2006, B.Sc. Biology, Radboud University Nijmegen
* 2006, B.Sc. Biology, Radboud University Nijmegen

Revision as of 09:51, 29 June 2011

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Contents

Contact Info

Marnix H. Medema
Marnix H. Medema

I work in the Department of Microbial Physiology and the Groningen Bioinformatics Centre at the University of Groningen, as a Ph.D. student on a project on genome mining and synthetic biology of microbial secondary metabolites.

Education

  • 2009 - present: Ph.D. Student, University of Groningen
  • 2008, M.Sc. Biomolecular Sciences, University of Groningen
  • 2006, B.Sc. Biology, Radboud University Nijmegen

Research interests

  1. Comparative and Evolutionary Genomics
  2. Antibiotics, Natural Products
  3. Synthetic Biology
  4. Streptomyces Biology

Publications

  • Medema MH*, Alam MT*, Breitling R, Takano E (2011) The future of industrial antibiotic production: from random mutagenesis to synthetic biology. Bioengineered Bugs, in press [1]
  • Alam MT, Medema MH, Takano E, Breitling R (2011) Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism. FEBS Letters, in press [2]
  • Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R (2011) antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Research, advance access [3]
  • Röttig M, Medema MH, Blin K, Rausch C, Weber T, Kohlbacher O (2011) NRPSPredictor2 -- a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Research, advance access. [4]
  • Medema MH*, Breitling R, Takano E (2011) Synthetic biology in Streptomyces bacteria. Methods in Enzymology 497: 485-502. [5]
  • Medema MH*, Alam MT*, Heijne WH, van den Berg MA, Müller U, Trefzer A, Bovenberg RA, Breitling R, Takano E (2011) Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus. Microbial Biotechnology 4(2): 300-305. [6]
  • Medema MH, Breitling R, Bovenberg R, Takano E (2011) Exploiting plug-and-play synthetic biology for drug discovery and production in microorganisms. Nature Reviews Microbiology 9(2): 131-137. [7]
  • Medema MH, Trefzer A, Kovalchuk A, van den Berg M, Müller U, Heijne W, Wu L, Alam MT, Ronning CM, Nierman WC, Bovenberg RA, Breitling R, Takano E (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution 2: 212-224. [8]
  • Medema MH*, Zhou M*, van Hijum SA, Gloerich J, Wessels HJ, Siezen RJ, Strous M (2010) A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis. BMC Genomics 11: 299. [9]
  • van Hijum SA*, Medema MH*, Kuipers OP (2009) Mechanisms and evolution of control logic in prokaryotic transcriptional regulation. Microbiology and Molecular Biology Reviews 73(3): 481-509. [10]
  • Ettwig KF, Shima S, van de Pas-Schoonen KT, Kahnt J, Medema MH, Op den Camp HJ, Jetten MS, Strous M (2008) Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environmental Microbiology 10(11): 3164-3173. [11]

*Contributed equally

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