User:Madar Inamul Hasan

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# Computational Mass Spectrometry
# Computational Mass Spectrometry
# Proteogenomics and Bioinformatics
# Proteogenomics and Bioinformatics
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==Research Techniques==
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<!-- Feel free to add brief descriptions to your research interests as well -->
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1 WetLab/Biotecnology Technique
 +
* Gene Cloning & Expression of Protein
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* Molecular Biology Techniques - PCR,RFLP
 +
* Genetic Polymorphism Study of the Human Sample or Genetics Variation Studies(SNPs) with PCR 
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* Clinical and Molecular Diagnostic of Human Disease (HLA Tissue Typing for Kidney Transplantation)
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* Microbiological techniques
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2 Mass Spectrometry Based Technique
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* Cell Lysis
 +
* FASP-  Filter Aided Sample Prep
 +
* BCA Assay
 +
* Stage Tip Technique
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* iTRAQ
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* In-Gel Digestion/ Off-Gell Digestion/Fractanation
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* 1D/2D Gel
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3 Computational Biology/Bioinformatics
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* Molecular Visualization Software : RasMol, Cn3d, spdbv.
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* Alignment & Editing Tools : BLAST, FASTA, BioEdit
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* Phylogenetic Analysis : Clustal X and Clustal W
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* Packages : Accelrys package.
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* Tools : Gene builder, Genscan,SOPMA, GORIV, PRIMER
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* Metabolomics Tool : Cell Designer.
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* Docking Tool : Hex, Arguslab & AutoDock
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* Structural Databases                  : CATH,SCOP,FSSP
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* Gene Prediction                      : Expasy tool
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4.Computational Mass Spectrometry
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* DataAnalysis - InHouse Softy
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* Database Search - SEQUEST,X!TANDEM,Proteome Discoverer,MS-GF+,Anderomeda
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* Spectrum Viewer - XCalibur,Thermo Scientific
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* iTRAQ - LTQ-iQuant,IDPicker,iTracker
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* Label Free Quantitation 
 +
* Phosphopeptide 
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* Matlab for Quantification and Statistical Analysis
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* Cytoscape/GeneGo for Pathway Analysis
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 +
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==Membership==
==Membership==

Revision as of 22:22, 20 December 2012

I am a new member of OpenWetWare!

Contents

Contact Info

Madar Inamul Hasan (an artistic interpretation)
Madar Inamul Hasan (an artistic interpretation)

I work in the Your Lab at XYZ University. I learned about OpenWetWare from Through a friend and Browsing I came to know about this., and I've joined because I wish to explore more about the Subject and Apply practically in the research..

Education

  • PhD,OncoProteomics,Department of Chemistry, Korea University,
  • M.Phil.,(Biotechnology),Vinayaga Mission University,
  • MS,Bioinformatics, Bharathidasan University,
  • BS,Biochemistry, University of Madras,
  • Post M.Sc., Advanced Diploma in Molecular Diagnostics (Sponsored by DBT, Govt. of India. New Delhi) Post M.Sc.,(ADMD)
  • “Post Graduate Diploma in Computer Application”, Bharathidasan University. (PGDCA)
  • “Diploma in Medical Laboratory Technology“,IMLTC,New Delhi, India. (DMLT)
  • “Diploma in Fundamental English”,BPR-Institute of Health and Medical Sciences, India. (DFE)
  • “Certificate in Medicinal Plant Cultivation“.Adiparasakti Agriculture College, India. (CMPC)
  • “Certificate in Mushroom Cultivation“.Adiparasakti Agriculture College, Tamilnadu, India. (CMC)


Research interests

  1. Cancer Biomarker and protein Quantification
  2. Computational Mass Spectrometry
  3. Proteogenomics and Bioinformatics

Research Techniques

1 WetLab/Biotecnology Technique

  • Gene Cloning & Expression of Protein
  • Molecular Biology Techniques - PCR,RFLP
  • Genetic Polymorphism Study of the Human Sample or Genetics Variation Studies(SNPs) with PCR
  • Clinical and Molecular Diagnostic of Human Disease (HLA Tissue Typing for Kidney Transplantation)
  • Microbiological techniques

2 Mass Spectrometry Based Technique

  • Cell Lysis
  • FASP- Filter Aided Sample Prep
  • BCA Assay
  • Stage Tip Technique
  • iTRAQ
  • In-Gel Digestion/ Off-Gell Digestion/Fractanation
  • 1D/2D Gel

3 Computational Biology/Bioinformatics

  • Molecular Visualization Software : RasMol, Cn3d, spdbv.
  • Alignment & Editing Tools : BLAST, FASTA, BioEdit
  • Phylogenetic Analysis : Clustal X and Clustal W
  • Packages : Accelrys package.
  • Tools : Gene builder, Genscan,SOPMA, GORIV, PRIMER
  • Metabolomics Tool : Cell Designer.
  • Docking Tool : Hex, Arguslab & AutoDock
  • Structural Databases  : CATH,SCOP,FSSP
  • Gene Prediction  : Expasy tool

4.Computational Mass Spectrometry

  • DataAnalysis - InHouse Softy
  • Database Search - SEQUEST,X!TANDEM,Proteome Discoverer,MS-GF+,Anderomeda
  • Spectrum Viewer - XCalibur,Thermo Scientific
  • iTRAQ - LTQ-iQuant,IDPicker,iTracker
  • Label Free Quantitation
  • Phosphopeptide
  • Matlab for Quantification and Statistical Analysis
  • Cytoscape/GeneGo for Pathway Analysis



Membership

  1. Member of The European Atherosclerosis Socitey, Sweden.Membership No: 1009. Since 2008
  2. Member in International Association of Computer Science and Information Technology (IACSIT). iHUB, Singapore 609431. Member No:80337544
  3. Member of European Compliance Academy Rapid Microbiological Method working group.
  4. Member in Bioinformatics-India | Hub for Bioinformatics Professionals of Indian Origin.
  5. Member in Bio Byte is a Nationwide Bioinformatics Resource Dataset
  6. Member in KOREA Science-The Gateway to S&T Information in Korea since 2010oct06
  7. Member in European Federation of Biotechnology. since 2010 Oct 14

Publications

  1. Goldbeter A and Koshland DE Jr. . pmid:6947258. PubMed HubMed [Paper1]
  2. JACOB F and MONOD J. . pmid:13718526. PubMed HubMed [Paper2]
    leave a comment about a paper here

  3. Mark Ptashne. A genetic switch. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press, 2004. isbn:0879697164. [Book1]
All Medline abstracts: PubMed HubMed

Useful links

Personal tools