User:Lindenb/Notebook/UMR915/2012/04/02: Difference between revisions
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testing the development server: | testing the development server: | ||
<pre> | <pre>$ python gene2pubmed/manage.py runserver | ||
Validating models... | Validating models... | ||
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[02/Apr/2012 07:57:11] "GET / HTTP/1.1" 200 2061</pre> | [02/Apr/2012 07:57:11] "GET / HTTP/1.1" 200 2061</pre> | ||
<div style="background-color:yellow; margin:20px;"> | |||
<h1>It worked!</h1> | |||
<h2>Congratulations on your first Django-powered page.</h2> | |||
<p>Of course, you haven't actually done any work yet. Here's what to do next:</p> | |||
<ul> | |||
<li>If you plan to use a database, edit the <code>DATABASES</code> setting in <code>gene2pubmed/settings.py</code>.</li> | |||
<li>Start your first app by running <code>python gene2pubmed/manage.py startapp [appname]</code>.</li> | |||
</ul> | |||
<p> | |||
You're seeing this message because you have <code>DEBUG = True</code> in your | |||
Django settings file and you haven't configured any URLs. Get to work! | |||
</p> | |||
</div> | |||
__NOTOC__ | __NOTOC__ | ||
Revision as of 06:12, 2 April 2012
 Project name
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<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Dailyvariant_effect_predictor.plFix for proxyreplace unless(getstore($url, $target_file) == 200) by my $status = system("/usr/bin/curl --proxy 'http://proxy:3128' -o '$target_file' -L '$url'");
(...)
my $status2 = system("/usr/bin/curl --proxy 'http://proxy:3128' -o '$target_file' -L --create-dirs '$BIOPERL_URL,'");
in the directory 'Bio': Align AlignIO Annotation Assembly Biblio bioperl-1.2.3 Cluster ClusterIO Coordinate Das DB EnsEMBL Event Expression Factory Graphics Index LiveSeq Location Map MapIO Matrix Ontology OntologyIO Phenotype Root Search SearchIO Seq SeqFeature SeqIO Structure Symbol Taxonomy tmp Tools Tree TreeIO Variation
Runperl variant_effect_predictor.pl --regulatory --sift=b --polyphen=b --regulatory --input_file 20120327.rs.vcf.gz --format vcf -o 20120402.vcf --vcf
| |
DJANGO
install ubuntu:
sudo apt-get install python-django
start a new project
$ django-admin startproject gene2pubmed
$ find gene2pubmed/ gene2pubmed/ gene2pubmed/urls.py gene2pubmed/__init__.py gene2pubmed/manage.py gene2pubmed/settings.py
testing the development server:
$ python gene2pubmed/manage.py runserver Validating models... 0 errors found Django version 1.3, using settings 'gene2pubmed.settings' Development server is running at http://127.0.0.1:8000/ Quit the server with CONTROL-C. [02/Apr/2012 07:57:11] "GET / HTTP/1.1" 200 2061
It worked!
Congratulations on your first Django-powered page.
Of course, you haven't actually done any work yet. Here's what to do next:
- If you plan to use a database, edit the
DATABASESsetting ingene2pubmed/settings.py. - Start your first app by running
python gene2pubmed/manage.py startapp [appname].
You're seeing this message because you have DEBUG = True in your
Django settings file and you haven't configured any URLs. Get to work!
