User:Kristian Ullrich: Difference between revisions
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*natural variation | *natural variation | ||
*population genomics | *population genomics | ||
molecular evolution | |||
*gene family expansion/contraction | |||
*protein domain composition | |||
*phylostratigraphy | |||
software development | software development | ||
*Image processing | *Image processing | ||
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2011 Botanikertagung, Berlin, Germany (Poster) | 2011 Botanikertagung, Berlin, Germany (Poster) | ||
2011 Plant Science Student Conference, Halle (Saale), Germany (Poster) | |||
2011 Molekularbiologie der Pflanzen, Dabringhausen, Germany (Poster) | 2011 Molekularbiologie der Pflanzen, Dabringhausen, Germany (Poster) | ||
2010 Plant Science Student Conference, Gatersleben, Germany (Poster) | |||
==Conference/Workshop Organization== | ==Conference/Workshop Organization== | ||
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==external links== | ==external links== | ||
*[http://www.labutils.de RootDetection - Software to measure root length full automatically] | *[http://www.labutils.de RootDetection - Software to measure root length full automatically] | ||
*[https://github.com/kullrich personal github] | |||
==Useful links== | ==Useful links== | ||
*[[OpenWetWare:Welcome|Introductory tutorial]] | *[[OpenWetWare:Welcome|Introductory tutorial]] | ||
*[[Help|OpenWetWare help pages]] | *[[Help|OpenWetWare help pages]] | ||
Revision as of 11:02, 12 November 2014
Contact Info
- Kristian Ullrich
- www.labutils.de
- Email me through OpenWetWare or through Kristian.Ullrich@biologie.uni-marburg.de
Education
- 2013 - Scientific coworker (Postdoc) in the group of Stefan Rensing plantco.de
- 2012-2012 Short visit in the group of Dirk Inzé (VIB - UGent - PSB) as a scientific coworker System biology of yield
- 2009-2012 PhD in the group of Marcel Quint Quint Lab
- 2008 Diplom (~MSc), Christian-Albrechts-University Kiel, Institue of Molecular Phytopathology (D. Cai Lab)
- 2001-2008 study of Biology at the Christian-Albrechts-University Kiel
Research interests
plant genetics
- phytohormone signaling
- natural variation
- population genomics
molecular evolution
- gene family expansion/contraction
- protein domain composition
- phylostratigraphy
software development
- Image processing
Publications
International peer-reviewed papers
[6] Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. (Ranjan A, Dickopf S, Ullrich KK, Rensing SA, Höcker U) BMC Plant Biology 2014 July 01.
[5] Optimized probe masking for comparative transcriptomics of closely related species. (Pöschl Y, Delker C, Trenner J, Ullrich KK, Quint M, Grosse I) Plos ONE 2013 Nov 08.
[4] Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom. (Janitza P, Ullrich KK, Quint M) frontiers in PLANT SCIENCE 2012 Dec 06.
[3] A transcriptomic hourglass in plant embryogenesis. (Quint M, Drost H-G, Gabel A, Ullrich KK, Boenn M, Grosse I) Nature 2012 Oct 04.
[2] Molecular Evolution and Selection Patterns of Plant F-box Proteins with C-terminal Kelch Repeats. (Schumann N, Navarro-Quezada AR, Ullrich K, Kuhl C and Quint M) Plant Physiology 2011 Feb.
[1] Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana. (Delker C, Pöschl Y, Raschke A, Ullrich K, Ettingshausen S, Hauptmann V, Grosse I, Quint M) Plant Cell. 2010 Jul 09.
Theses
Ullrich KK 2013. Population and quantitative genetic analysis of auxin response pathways in Arabidopsis thaliana. PhD Thesis, University of Halle-Wittenberg, Germany. 174pp. PDF
Ullrich KK 2009. Klonierung Organ-spezifischer Gene aus der Kartoffel und Untersuchung ihres Potentials zur Erzeugung gentechniser Pathogen-Resistenz. Diploma (~MSc) Thesis, Christian-Albrechts University of Kiel, Germany. 115pp.
Conference/Workshop Participation
2014 NESCent Catalysis Meeting: Scaling Evoluiton from genomes to ecosystems in peatmosses (Sphagnum)
2014 MOSS: The 17th Annual Moss International Conference, Bejing, China (Talk)
2014 PAG: Plant and Animal Genome XXII Conference, San Diego, CA, USA (Talk)
2013 MOSS: The 16th Annual Moss International Conference, Praha, Czech Republic (Talk)
2013 PAG: Plant and Animal Genome XXI Conference, San Diego, CA, USA (Paticipant)
2012 Meeting on Advances and Challenges of RNA-Seq Analysis, Halle (Saale), Germany (Paticipant)
2012 Workshop of Molecular Evolution, Cesky Krumlov, Czech Republic (Paticipant)
2011 Botanikertagung, Berlin, Germany (Poster)
2011 Plant Science Student Conference, Halle (Saale), Germany (Poster)
2011 Molekularbiologie der Pflanzen, Dabringhausen, Germany (Poster)
2010 Plant Science Student Conference, Gatersleben, Germany (Poster)
Conference/Workshop Organization
2014 Imaging-Workshop: Modern high throughput phenotyping of Arabidopsis
2014 XVI. Annual Meeting of the International Society of Endocytobiology - German Section (ISE-G)
2013 Black Forest Summer School on Bioinformatics
Teaching Experience
(Co-)Supervision of Masters and Bachelor theses as well as student projects
Participation in courses on teaching methods
Courses (co-)taught
Botanisches Anfängerpraktikum
Funktionelle und vergleichende Genomik der Pflanzen und Algen
Pflanzliche Zellbiologie
Einführung in die Bioinformatik und Statistik
Bioinformatik: Genomevolution, Sequenzanalyse, Genomik, Phylogenie
