User:Kristian Ullrich

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==Contact Info==
==Contact Info==
*Kristian Ullrich
*Kristian Ullrich
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*[http://http://www.labutils.de]
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*[http://http://www.labutils.de www.labutils.de]
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*[[Special:Emailuser/Kristian Ullrich|Email me through OpenWetWare]] or through ku@labutils.de
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*[[Special:Emailuser/Kristian Ullrich|Email me through OpenWetWare]] or through Kristian.Ullrich@biologie.uni-marburg.de
==Education==
==Education==
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*2012-2012 Short visit in the group of Dirk Inzé [http://www.psb.ugent.be/the-ipb-division/systems-biology-of-yield System biology of yield]
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*2013 - Scientific coworker (Postdoc) in the group of Stefan Rensing [http://www.plantco.de plantco.de]
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*2012-2012 Short visit in the group of Dirk Inzé (VIB - UGent - PSB) as a scientific coworker [http://www.psb.ugent.be/the-ipb-division/systems-biology-of-yield System biology of yield]
*2009-2012 PhD in the group of Marcel Quint [http://openwetware.org/wiki/Quint_Lab Quint Lab]
*2009-2012 PhD in the group of Marcel Quint [http://openwetware.org/wiki/Quint_Lab Quint Lab]
*2008 Diplom (~MSc), Christian-Albrechts-University Kiel, Institue of Molecular Phytopathology ([http://www.uni-kiel.de/phytomed/ D. Cai Lab])
*2008 Diplom (~MSc), Christian-Albrechts-University Kiel, Institue of Molecular Phytopathology ([http://www.uni-kiel.de/phytomed/ D. Cai Lab])
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==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
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[[Image:Cover_nature_the_green_hourglass.jpg|thumb|right|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11394.html Nature 2012 Oct 04.]]]
plant genetics
plant genetics
*phytohormone signaling
*phytohormone signaling
*natural variation
*natural variation
*population genomics
*population genomics
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molecular evolution
 +
*gene family expansion/contraction
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*protein domain composition
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*phylostratigraphy
software development
software development
*Image processing
*Image processing
==Publications==
==Publications==
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[[Image:Cover_nature_the_green_hourglass.jpg|thumb|right|[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11394.html Nature 2012 Oct 04.]]]
 
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* A transcriptomic hourglass in plant embryogenesis. (Quint M, Drost H-G, Gabel A, <u>Ullrich KK</u>, Boenn M, Grosse I)[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11394.html Nature 2012 Oct 04.]
 
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* Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana. (Delker C, Pöschl Y, Raschke A, <u>Ullrich K</u>, Ettingshausen S, Hauptmann V, Grosse I, Quint M)[http://www.ncbi.nlm.nih.gov/pubmed/20622145?dopt=Abstract Plant Cell. 2010 Jul 9.]
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'''International peer-reviewed papers'''
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[6] Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. (Ranjan A, Dickopf S, <u>Ullrich KK</u>, Rensing SA, Höcker U) [http://www.biomedcentral.com/1471-2229/14/178/abstract BMC Plant Biology 2014 July 01.]
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[5] Optimized probe masking for comparative transcriptomics of closely related species. (Pöschl Y, Delker C, Trenner J, <u>Ullrich KK</u>, Quint M, Grosse I) [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0078497 Plos ONE 2013 Nov 08.]
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[4] Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom. (Janitza P, <u>Ullrich KK</u>, Quint M) [http://www.frontiersin.org/Plant_Proteomics/10.3389/fpls.2012.00271/abstract frontiers in PLANT SCIENCE 2012 Dec 06.]
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[3] A transcriptomic hourglass in plant embryogenesis. (Quint M, Drost H-G, Gabel A, <u>Ullrich KK</u>, Boenn M, Grosse I) [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11394.html Nature 2012 Oct 04.]
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[2] Molecular Evolution and Selection Patterns of Plant F-box Proteins with C-terminal Kelch Repeats. (Schumann N, Navarro-Quezada AR, <u>Ullrich K</u>, Kuhl C and Quint M) [http://www.plantphysiol.org/content/155/2/835 Plant Physiology 2011 Feb.]
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[1] Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana. (Delker C, Pöschl Y, Raschke A, <u>Ullrich K</u>, Ettingshausen S, Hauptmann V, Grosse I, Quint M) [http://www.plantcell.org/content/22/7/2184.long Plant Cell. 2010 Jul 09.]
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'''Theses'''
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<u>Ullrich KK</u> 2013. Population and quantitative genetic analysis of auxin response pathways in Arabidopsis thaliana. PhD Thesis, University of Halle-Wittenberg, Germany. 174pp. [http://digital.bibliothek.uni-halle.de/hs/content/titleinfo/1691867 PDF]
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<u>Ullrich KK</u> 2009. Klonierung Organ-spezifischer Gene aus der Kartoffel und Untersuchung ihres Potentials zur Erzeugung gentechniser Pathogen-Resistenz. Diploma (~MSc) Thesis, Christian-Albrechts University of Kiel, Germany. 115pp.
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==Conference/Workshop Participation==
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2014 NESCent Catalysis Meeting: Scaling Evoluiton from genomes to ecosystems in peatmosses (Sphagnum)
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2014 MOSS: The 17th Annual Moss International Conference, Bejing, China (Talk)
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2014 PAG: Plant and Animal Genome XXII Conference, San Diego, CA, USA (Talk)
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2013 MOSS: The 16th Annual Moss International Conference, Praha, Czech Republic (Talk)
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2013 PAG: Plant and Animal Genome XXI Conference, San Diego, CA, USA (Paticipant)
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2012 Meeting on Advances and Challenges of RNA-Seq Analysis, Halle (Saale), Germany (Paticipant)
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2012 Workshop of Molecular Evolution, Cesky Krumlov, Czech Republic (Paticipant)
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2011 Botanikertagung, Berlin, Germany (Poster)
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2011 Plant Science Student Conference, Halle (Saale), Germany (Poster)
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2011 Molekularbiologie der Pflanzen, Dabringhausen, Germany (Poster)
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 +
2010 Plant Science Student Conference, Gatersleben, Germany (Poster)
 +
 
 +
==Conference/Workshop Organization==
 +
 
 +
2014 Imaging-Workshop: Modern high throughput phenotyping of Arabidopsis
 +
 
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2014 XVI. Annual Meeting of the International Society of Endocytobiology - German Section (ISE-G)
 +
 
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2013 Black Forest Summer School on Bioinformatics
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 +
==Teaching Experience==
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'''(Co-)Supervision''' of Masters and Bachelor theses as well as student projects
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'''Participation in courses on teaching methods'''
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'''Courses (co-)taught'''
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Botanisches Anfängerpraktikum
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Funktionelle und vergleichende Genomik der Pflanzen und Algen
 +
 
 +
Pflanzliche Zellbiologie
 +
 
 +
Einführung in die Bioinformatik und Statistik
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* Molecular Evolution and Selection Patterns of Plant F-box Proteins with C-terminal Kelch Repeats. (Schumann N, Navarro-Quezada AR, <u>Ullrich K</u>, Kuhl C and Quint M)[http://www.plantphysiol.org/cgi/content/short/pp.110.166579?keytype=ref&ijkey=m2nVn1bzbefeqri Plant Physiology Preview 2010 Nov 30.]
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Bioinformatik: Genomevolution, Sequenzanalyse, Genomik, Phylogenie
==external links==
==external links==
*[http://www.labutils.de RootDetection - Software to measure root length full automatically]
*[http://www.labutils.de RootDetection - Software to measure root length full automatically]
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*[https://github.com/kullrich personal github]
==Useful links==
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[Help|OpenWetWare help pages]]
*[[Help|OpenWetWare help pages]]

Current revision

Kristian Ullrich
Kristian Ullrich

Contents

Contact Info

Education

Research interests

plant genetics

  • phytohormone signaling
  • natural variation
  • population genomics

molecular evolution

  • gene family expansion/contraction
  • protein domain composition
  • phylostratigraphy

software development

  • Image processing

Publications

International peer-reviewed papers

[6] Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation. (Ranjan A, Dickopf S, Ullrich KK, Rensing SA, Höcker U) BMC Plant Biology 2014 July 01.

[5] Optimized probe masking for comparative transcriptomics of closely related species. (Pöschl Y, Delker C, Trenner J, Ullrich KK, Quint M, Grosse I) Plos ONE 2013 Nov 08.

[4] Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom. (Janitza P, Ullrich KK, Quint M) frontiers in PLANT SCIENCE 2012 Dec 06.

[3] A transcriptomic hourglass in plant embryogenesis. (Quint M, Drost H-G, Gabel A, Ullrich KK, Boenn M, Grosse I) Nature 2012 Oct 04.

[2] Molecular Evolution and Selection Patterns of Plant F-box Proteins with C-terminal Kelch Repeats. (Schumann N, Navarro-Quezada AR, Ullrich K, Kuhl C and Quint M) Plant Physiology 2011 Feb.

[1] Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana. (Delker C, Pöschl Y, Raschke A, Ullrich K, Ettingshausen S, Hauptmann V, Grosse I, Quint M) Plant Cell. 2010 Jul 09.

Theses

Ullrich KK 2013. Population and quantitative genetic analysis of auxin response pathways in Arabidopsis thaliana. PhD Thesis, University of Halle-Wittenberg, Germany. 174pp. PDF

Ullrich KK 2009. Klonierung Organ-spezifischer Gene aus der Kartoffel und Untersuchung ihres Potentials zur Erzeugung gentechniser Pathogen-Resistenz. Diploma (~MSc) Thesis, Christian-Albrechts University of Kiel, Germany. 115pp.

Conference/Workshop Participation

2014 NESCent Catalysis Meeting: Scaling Evoluiton from genomes to ecosystems in peatmosses (Sphagnum)

2014 MOSS: The 17th Annual Moss International Conference, Bejing, China (Talk)

2014 PAG: Plant and Animal Genome XXII Conference, San Diego, CA, USA (Talk)

2013 MOSS: The 16th Annual Moss International Conference, Praha, Czech Republic (Talk)

2013 PAG: Plant and Animal Genome XXI Conference, San Diego, CA, USA (Paticipant)

2012 Meeting on Advances and Challenges of RNA-Seq Analysis, Halle (Saale), Germany (Paticipant)

2012 Workshop of Molecular Evolution, Cesky Krumlov, Czech Republic (Paticipant)

2011 Botanikertagung, Berlin, Germany (Poster)

2011 Plant Science Student Conference, Halle (Saale), Germany (Poster)

2011 Molekularbiologie der Pflanzen, Dabringhausen, Germany (Poster)

2010 Plant Science Student Conference, Gatersleben, Germany (Poster)

Conference/Workshop Organization

2014 Imaging-Workshop: Modern high throughput phenotyping of Arabidopsis

2014 XVI. Annual Meeting of the International Society of Endocytobiology - German Section (ISE-G)

2013 Black Forest Summer School on Bioinformatics

Teaching Experience

(Co-)Supervision of Masters and Bachelor theses as well as student projects

Participation in courses on teaching methods

Courses (co-)taught

Botanisches Anfängerpraktikum

Funktionelle und vergleichende Genomik der Pflanzen und Algen

Pflanzliche Zellbiologie

Einführung in die Bioinformatik und Statistik

Bioinformatik: Genomevolution, Sequenzanalyse, Genomik, Phylogenie

external links

Useful links

Personal tools