User:Karmella Haynes/Notebook/PcTF Genomics/2013/07/04

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(07/04/13)
 
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==mm/dd/yy==
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==07/04/13==
<!-- Precede finished items with a checkmark &#x2713; -->
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* Gl4-EED/luc time/dose - luc assay & cell counts
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* Gal4-EED/luc time/dose - luc assay & cell counts
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* Happy July 4th! :)
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* Gal4-EED/luc Dox induction #2
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<u>Assay reagents</u>
<u>Assay reagents</u>
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* Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/07/04 6/18/13])
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* Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/06/18 6/18/13])
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* Samples loaded in triplicate (by columns)
* Samples loaded in triplicate (by columns)
* Included luc buffer + FACS-buffer "blank" sample (well D1)
* Included luc buffer + FACS-buffer "blank" sample (well D1)
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* Other steps same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/07/04 6/18/13]
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* Other steps same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/06/18 6/18/13]
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| <u>Sample ID</u> || <u>Gated count/ 20 μL</u> || &nbsp; || <u>Cells/ 100 μL</u>
| <u>Sample ID</u> || <u>Gated count/ 20 μL</u> || &nbsp; || <u>Cells/ 100 μL</u>
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|-
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| sample 1 || ### || x5 = || 54,400
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| sample 1 || 13,844 || x5 = || 69,220
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|-
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| sample 2 || 10,430 || x5 = || 52,150
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| sample 2 || 12,286 || x5 = || 61,430
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|-
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| sample 3 || 11,897 || x5 = || 59,485
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| sample 3 || 15,784 || x5 = || 78,920
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|-
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| sample 4 || 10,316 || x5 = || 51,580
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| sample 4 || 16,323 || x5 = || 81,615
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|-
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| sample 5 || 9,784 || x5 = || 48,920
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| sample 5 || 16,545 || x5 = || 82,725
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|-
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| sample 6 || 11,549 || x5 = || 57,745
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| sample 6 || 17,885  || x5 = || 89,425
|}
|}
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----
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'''Gal4-EED/luc Dox induction #2'''<br>
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* Lower range worked very well for trail #1! Saw ranges in expression for 1.0 - 10<sup>-4</sup> μg/mL doc after 4 days
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* Repeat induction and test after 48 hours
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# 1.0 μg/mL dox
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# 10<sup>-1</sup>
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# 10<sup>-2</sup>
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# 10<sup>-3</sup>
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# 10<sup>-4</sup>
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# 0
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Addition of serial dilutions of dox to cells
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* Start with 3.5 mL growth medium in cell culture wells. Remove some growth medium from cells where necessary.
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* Set up the following serial dilutions (using appropriate growth medium) in sterile 1 mL tubes...
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{| {{table}}
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|-
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| &nbsp; || tube 1 || 2 || 3 || 4 || 5 || 6
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|-
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| 1 mg/mL dox (μL) || 8.0 || --- || --- || --- || --- || ---
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|-
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| mixture from prior tube (μL) || --- || 100 || 100 || 100 || 100 || ---
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|-
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| +growth med. (μL) || 1000 || 900 ||  900 ||  900 ||  900 || ---
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|-
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| Final [dox] (μg/mL) in 4 mL med. || 1.0 || 10<sup>-1</sup> || 10<sup>-2</sup> || 10<sup>-3</sup> || 10<sup>-4</sup> || 0
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|}
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Current revision

Pc-TF Genomics Main project page
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07/04/13

  • Gal4-EED/luc time/dose - luc assay & cell counts
  • Happy July 4th! :)
  • Gal4-EED/luc Dox induction #2

Luciferase activity assay - time point: 4 days


Cell prep

  • Harvested cells (induced on 6/30/13)
    • Seeded new 2 new plates with non-induced cells from 6/30/13
    • Pelleted all of the dox+ cells, resuspended in 2 mL FACS buffer


Assay reagents

  • Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as 6/18/13)


Luc assay

  • Filtered 700 μL cells through strainer caps
  • Used opaque white Costar plate (from Rege lab)
  • Samples loaded in triplicate (by columns)
  • Included luc buffer + FACS-buffer "blank" sample (well D1)
  • Other steps same as 6/18/13


Cell counts

  • Wang lab's Accuri flow cytometer.
  • Set machine to read 20 uL of cells
  • Be sure to "clean" with water-run in between samples


Sample ID Gated count/ 20 μL   Cells/ 100 μL
sample 1 13,844 x5 = 69,220
sample 2 12,286 x5 = 61,430
sample 3 15,784 x5 = 78,920
sample 4 16,323 x5 = 81,615
sample 5 16,545 x5 = 82,725
sample 6 17,885 x5 = 89,425



Gal4-EED/luc Dox induction #2

  • Lower range worked very well for trail #1! Saw ranges in expression for 1.0 - 10-4 μg/mL doc after 4 days
  • Repeat induction and test after 48 hours
  1. 1.0 μg/mL dox
  2. 10-1
  3. 10-2
  4. 10-3
  5. 10-4
  6. 0

Addition of serial dilutions of dox to cells

  • Start with 3.5 mL growth medium in cell culture wells. Remove some growth medium from cells where necessary.
  • Set up the following serial dilutions (using appropriate growth medium) in sterile 1 mL tubes...
  tube 1 2 3 4 5 6
1 mg/mL dox (μL) 8.0 --- --- --- --- ---
mixture from prior tube (μL) --- 100 100 100 100 ---
+growth med. (μL) 1000 900 900 900 900 ---
Final [dox] (μg/mL) in 4 mL med. 1.0 10-1 10-2 10-3 10-4 0




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