User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/07: Difference between revisions
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# Assign Binding Proteins to Experiments: Protein label = the appropriate binding protein (created in previous step). Click [Next >]. | # Assign Binding Proteins to Experiments: Protein label = the appropriate binding protein (created in previous step). Click [Next >]. | ||
# Setup Preprocessing: Desired preprocessing = QSeq; Normalization method = none; Sequence files against which to quantify = browse to Desktop > Human Genome Ref > select all NC...gbk files. | # Setup Preprocessing: Desired preprocessing = QSeq; Normalization method = none; Sequence files against which to quantify = browse to Desktop > Human Genome Ref > select all NC...gbk files. | ||
# Select "Use features of type(s)" and set to "gene". | ## Select "Use features of type(s)" and set to "gene". | ||
#Genome filtering = Discover peaks in the entire genome. | ## Genome filtering = Discover peaks in the entire genome. | ||
# Configure Advanced Options: under General, Graphs > Create Wiggle (.wig). Set Location to ChIPseq Wig Files on desktop. | ## Configure Advanced Options: under General, Graphs > Create Wiggle (.wig). Set Location to ChIPseq Wig Files on desktop. | ||
# Configure Advanced Options: under General, Alignment Files > Create BED Alignment (.bed). Set Location to ChIPseq BED Files on desktop. | ## Configure Advanced Options: under General, Alignment Files > Create BED Alignment (.bed). Set Location to ChIPseq BED Files on desktop. | ||
# Configure Advanced Options: under Peak Detection, is set to Qseq Peak Finder by default. Leave this as-is for now. | ## Configure Advanced Options: under Peak Detection, is set to Qseq Peak Finder by default. Leave this as-is for now. | ||
## Click [Next >]. Wait a while | |||
# | |||
Revision as of 20:09, 7 January 2013
Pc-TF Genomics | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
01/07/13
Array Star analysis
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