User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/07: Difference between revisions

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# Open '''Array Star'''. ''Windows only. This can be run on Parallels from a Mac.''
# Open '''Array Star'''. ''Windows only. This can be run on Parallels from a Mac.''
# Click "Start Chip-Seq project..."
# Click "Start Chip-Seq project..."
# Click [Add SeqMan NGen .assembly folder...]
# Click [Add File..]
# Select a ###.assembly folder from the SeqMan NGen Projects folder (shared desktop). Processing will take a while.
# Select a ###.bam file from the ChiP seq data folder (shared desktop). Click [Next >].
# Create binding proteins: Click [Create Binding Protein]. Binding protein label = the name of the protein that was pulled down by the antibody via ChIP. Binding site type = Unknown.
Click [OK].




Revision as of 19:27, 7 January 2013

Pc-TF Genomics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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01/07/13

  • Array Star analysis

Array Star analysis

  1. Open Array Star. Windows only. This can be run on Parallels from a Mac.
  2. Click "Start Chip-Seq project..."
  3. Click [Add File..]
  4. Select a ###.bam file from the ChiP seq data folder (shared desktop). Click [Next >].
  5. Create binding proteins: Click [Create Binding Protein]. Binding protein label = the name of the protein that was pulled down by the antibody via ChIP. Binding site type = Unknown.

Click [OK].



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