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 Pc-TF Genomics
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01/06/13
- ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
- Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock
| Gene |
Chromosome |
Expected state |
H3K27me3
max. DOC |
H3K27me3 mock
max. DOC |
PcTF
max. DOC |
PcTF mock
max. DOC
|
| ALAS1 |
chr 3 |
active |
~160 |
~100 |
~10 |
|
| TBP |
chr 6 |
active |
~160 |
~275 |
~16 |
|
| ACTB |
chr 7 |
active |
~180 |
~1 |
~22
|
| GUSB |
chr 7 |
active |
~160 |
~240 |
~16
|
| PPIA |
chr 7 |
active |
~90 |
~480 |
~10
|
| GAPDH |
chr 12 |
active |
~90 |
~240 |
|
| B2M |
chr 15 |
active |
0 |
~1 |
|
| G6PD |
chr X (23) |
active |
~130 |
0
|
| HPRT1 |
chr X (23) |
active |
~150 |
~320
|
| PGK1 |
chr X (23) |
active |
~240 |
~475 |
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| CDKN2A |
chr9 |
silent (H3K27me3+) |
~90 |
~650
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| MMP12 |
chr11 |
silent (H3K27me3+) |
~18 |
~1
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| MYT1 |
chr20 |
silent (H3K27me3+) |
~270 |
~525
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| OLIG1 |
chr21 |
silent (H3K27me3+) |
0 |
0 |
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| OLIG2 |
chr21 |
silent (H3K27me3+) |
~130 |
0
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Pc-TF Genomics
