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Pc-TF Genomics
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01/06/13
- ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
- Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock
Gene |
Chromosome |
Expected state |
H3K27me3 max. DOC |
H3K27me3 mock max. DOC |
PcTF max. DOC |
PcTF mock max. DOC
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ALAS1 |
chr 3 |
active |
~160 |
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TBP |
chr 6 |
active |
~160 |
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ACTB |
chr 7 |
active |
~180
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GUSB |
chr 7 |
active |
~160
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PPIA |
chr 7 |
active |
~90
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GAPDH |
chr 12 |
active |
~90
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B2M |
chr 15 |
active |
0
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G6PD |
chr X |
active |
~130
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HPRT1 |
chr X (24) |
active |
~150
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PGK1 |
chr X (24) |
active |
~240
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CDKN2A |
chr9 |
silent (H3K27me3+) |
~90
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MMP12 |
chr11 |
silent (H3K27me3+) |
~18
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MYT1 |
chr20 |
silent (H3K27me3+) |
~270
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OLIG1 |
chr21 |
silent (H3K27me3+) |
0
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OLIG2 |
chr21 |
silent (H3K27me3+) |
~130
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