User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/06

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| Gene || Chromosome || Expected state || H3K27me3 max. DOC || H3K27me3 mock max. DOC || PcTF max. DOC || PcTF mock max. DOC
| Gene || Chromosome || Expected state || H3K27me3 max. DOC || H3K27me3 mock max. DOC || PcTF max. DOC || PcTF mock max. DOC
|-
|-
-
| ALAS1 || chr 3 || active || ~160 || ||  ||  ||
+
| ALAS1 || chr 3 || active || ~160 || ~100 ||  ||   
|-
|-
-
| TBP || chr 6 || active || ~160 ||
+
| TBP || chr 6 || active || ~160 || ~275 ||  ||
|-
|-
| ACTB || chr 7 || active || ~180
| ACTB || chr 7 || active || ~180

Revision as of 20:13, 6 January 2013

Pc-TF Genomics Main project page
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01/06/13

  • ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
  • Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock


Gene Chromosome Expected state H3K27me3 max. DOC H3K27me3 mock max. DOC PcTF max. DOC PcTF mock max. DOC
ALAS1 chr 3 active ~160 ~100
TBP chr 6 active ~160 ~275
ACTB chr 7 active ~180
GUSB chr 7 active ~160
PPIA chr 7 active ~90
GAPDH chr 12 active ~90
B2M chr 15 active 0
G6PD chr X active ~130
HPRT1 chr X (24) active ~150
PGK1 chr X (24) active ~240
CDKN2A chr9 silent (H3K27me3+) ~90
MMP12 chr11 silent (H3K27me3+) ~18
MYT1 chr20 silent (H3K27me3+) ~270
OLIG1 chr21 silent (H3K27me3+) 0
OLIG2 chr21 silent (H3K27me3+) ~130



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