User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/06

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Line 30: Line 30:
| PPIA || chr 7 || active || ~90 || ~480 || ~10
| PPIA || chr 7 || active || ~90 || ~480 || ~10
|-
|-
-
| GAPDH || chr 12 || active || ~90 || ~240 ||
+
| GAPDH || chr 12 || active || ~90 || ~240 || ~27
|-
|-
| B2M || chr 15 || active || 0 || ~1 || ~15
| B2M || chr 15 || active || 0 || ~1 || ~15
Line 46: Line 46:
| MYT1 || chr20 || silent (H3K27me3+) || '''~270''' || ~525 || ~32
| MYT1 || chr20 || silent (H3K27me3+) || '''~270''' || ~525 || ~32
|-
|-
-
| OLIG1 || chr21 || silent (H3K27me3+) || 0 || 0 ||  
+
| OLIG1 || chr21 || silent (H3K27me3+) || 0 || 0 || ~5 ||
|-
|-
-
| OLIG2 || chr21 || silent (H3K27me3+) || ~130 || 0
+
| OLIG2 || chr21 || silent (H3K27me3+) || ~130 || 0 || 0 ||
|}
|}

Current revision

Pc-TF Genomics Main project page
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01/06/13

  • ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
  • Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock


Gene Chromosome Expected state H3K27me3
max. DOC 		H3K27me3 mock
max. DOC 		PcTF
max. DOC 		PcTF mock
max. DOC
ALAS1 chr 3 active ~160 ~100 ~10
TBP chr 6 active ~160 ~275 ~16
ACTB chr 7 active ~180 ~1 ~22
GUSB chr 7 active ~160 ~240 ~16
PPIA chr 7 active ~90 ~480 ~10
GAPDH chr 12 active ~90 ~240 ~27
B2M chr 15 active 0 ~1 ~15
G6PD chr X (23) active ~130 0 ~14
HPRT1 chr X (23) active ~150 ~320 ~11
PGK1 chr X (23) active ~240 ~475 ~12
CDKN2A chr9 silent (H3K27me3+) ~90 ~650 ~17
MMP12 chr11 silent (H3K27me3+) ~18 ~1 ~6
MYT1 chr20 silent (H3K27me3+) ~270 ~525 ~32
OLIG1 chr21 silent (H3K27me3+) 0 0 ~5
OLIG2 chr21 silent (H3K27me3+) ~130 0 0



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