User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/26
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Workflow | Workflow | ||
| - | * Open SeqMan Pro. File > Open > navigate to the desired ###. | + | * Open SeqMan Pro. ''File > Open >'' ...navigate to the desired ###.assembly file in the SeqMan NGen Projects folder. Processing takes 5 -10 minutes. |
* In an internet browser, go to the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC genome browser]. Select Feb. 2009 GRCh37/hg19. | * In an internet browser, go to the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC genome browser]. Select Feb. 2009 GRCh37/hg19. | ||
* Enter a gene name. Click [Submit]. | * Enter a gene name. Click [Submit]. | ||
* Take note of the chromosome number and coordinates. | * Take note of the chromosome number and coordinates. | ||
* Find the appropriate assembly template in the SeqMan Pro (e.g., NC_000001 for chromosome 1). Double click it. | * Find the appropriate assembly template in the SeqMan Pro (e.g., NC_000001 for chromosome 1). Double click it. | ||
| + | * Select ''Contig > Strategy View'' to view the enrichment histogram | ||
Revision as of 18:53, 26 December 2012
 Pc-TF Genomics
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12/26/12
ChIP: PcTF vs. PcTF mock
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