User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/26

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Workflow
Workflow
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* Go to UCSC genome browser. Search for gene. Get coordinates.
+
* Go to the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC genome browser]. Select Feb. 2009 GRCh37/hg19.
 +
* Search for the gene by name. Get coordinates
1. CDKN2A,  
1. CDKN2A,  

Revision as of 17:43, 26 December 2012

Pc-TF Genomics Main project page
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12/26/12

  • ChIP-seq enrichment: PcTF vs. PcTF mock for select genes

ChIP: PcTF vs. PcTF mock

  • Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
  • Open in SeqMan pro to see raw values for four genes from 2011 paper.

Workflow

  • Go to the UCSC genome browser. Select Feb. 2009 GRCh37/hg19.
  • Search for the gene by name. Get coordinates

1. CDKN2A,




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