User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/13: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
Line 15: Line 15:
'''SeqMan workflow'''<br>
'''SeqMan workflow'''<br>
# Open SeqMan NGen
# Open SeqMan NGen
#  
# In the Welcome window, select Import BAM file, [Next]


View Results
View Results

Revision as of 11:40, 13 December 2012

Pc-TF Genomics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>


12/13/12

  • DNASTAR ChIP seq data analysis: SeqMan Pro

SeqMan workflow

  1. Open SeqMan NGen
  2. In the Welcome window, select Import BAM file, [Next]

View Results

  1. Open SeqMan Pro
  2. Two windows appear: (1) Report, (2) filename.assembly
  3. Double click on one of the alignments in filename.assembly (e.g., NC_000001(1>249240538) NC_000001), to open "Alignment of ..." window
  4. Select Contig > Strategy View to view the enrichment histogram



Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13&oldid=663596"