User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/13: Difference between revisions
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# Set Up Project Files: Project name = some name; Project folder = SeqMan NGen Projects (desktop); Temporary file location = SeqMan NGen Projects (desktop). Click [Next >] | # Set Up Project Files: Project name = some name; Project folder = SeqMan NGen Projects (desktop); Temporary file location = SeqMan NGen Projects (desktop). Click [Next >] | ||
# Input Template Files: click [Add...]; browse to Karmella's iMac > Macintosh HD> Users > karmelahaynes > Desktop > Human Genome Ref. Select all files and click [Open]. Click [Next >]. | # Input Template Files: click [Add...]; browse to Karmella's iMac > Macintosh HD> Users > karmelahaynes > Desktop > Human Genome Ref. Select all files and click [Open]. Click [Next >]. | ||
*Note: The template files (Homosapiens.NC_...) were downloaded from the internet using the DNASTAR QSeq application. | |||
# Input BAM Layout File: browse to Karmella's iMac > [C] Windows 7 > Users > khaynes > Desktop > ChIP seq data. Chose a .bam file. Click [Next >]. | # Input BAM Layout File: browse to Karmella's iMac > '''[C] Windows 7''' > Users > khaynes > Desktop > ChIP seq data. Chose a .bam file. Click [Next >]. | ||
*Note: for this step, make sure Parallels is active, and log in as khaynes | |||
# Assembly Option: Genome ploidy = Diploid | # Assembly Option: Genome ploidy = Diploid | ||
# Your assembly is ready to begin: click [Assemble]. Wait a while. | # Your assembly is ready to begin: click [Assemble]. Wait a while. |
Revision as of 15:43, 18 December 2012
Pc-TF Genomics | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
12/13/12
SeqMan workflow
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