User:Karmella Haynes/Notebook/PcTF Genomics/2012/09/21: Difference between revisions

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'''Enrichment Histogram'''<br>
'''Enrichment Histogram'''<br>
* Start the ''Array Star'' software on the Windows platform
* Start the '''Array Star''' software on the Windows platform
* Open project Pc-TF (note: need to write protocol for creatign new ChIP-seq project)
* Open project Pc-TF (note: need to write protocol for creatign new ChIP-seq project)
* Open the Peak Table
* Open the Peak Table
* Select rows to export
* Select rows to export
* Choose - Data > Export
* Choose - Data > Export
** Save to: Browse folder ("ChIP seq" on desktop) and type a file name (''PcTF_092112'')  
** Save to: Browse folder ('''ChIP seq''' on desktop) and type a file name ('''PcTF_092112''')  


* ''Error: Find reads mer matches. Finding matches (141 Mbases, 0.00100 k reads processed). Values exceeded storge bit allocation''
* ''Error: Find reads mer matches. Finding matches (141 Mbases, 0.00100 k reads processed). Values exceeded storge bit allocation'' (Close)
 
*





Revision as of 21:15, 21 September 2012

Pc-TF Genomics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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09/21/12

  • ChIP-seq: generate enrichment histogram using DNAStar "Array Star"



Enrichment Histogram

  • Start the Array Star software on the Windows platform
  • Open project Pc-TF (note: need to write protocol for creatign new ChIP-seq project)
  • Open the Peak Table
  • Select rows to export
  • Choose - Data > Export
    • Save to: Browse folder (ChIP seq on desktop) and type a file name (PcTF_092112)
  • Error: Find reads mer matches. Finding matches (141 Mbases, 0.00100 k reads processed). Values exceeded storge bit allocation (Close)