User:Karmella Haynes/Notebook/PcTF Genomics

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(Cell Type Study)
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==Cell Type Study==
==Cell Type Study==
* Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH
* Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH
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==PcTF Expression/ Reporter Activation==
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* Measure range of PcTF expression in transiently transfected cells - flow cytometry

Revision as of 01:47, 3 June 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina:
  • Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN)
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH

PcTF Expression/ Reporter Activation

  • Measure range of PcTF expression in transiently transfected cells - flow cytometry


Recent changes

28 September 2014

+      10:16 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/24‎ (7 changes) . . (+1,035) . . (Page history) [Karmella Haynes‎ (7×)]
+ N    10:06 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/25‎ (3 changes) . . (+1,442) . . (Page history) [Karmella Haynes‎ (3×)]


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