User:Karmella Haynes/Notebook/PcTF Genomics

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(→Illumina ChIP-seq)
(→Illumina ChIP-seq)
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* Enrichment analysis (DNASTAR software)
* Enrichment analysis (DNASTAR software)
** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
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** BAM --> wig files for UCSC browser workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/01/07 01/07/2013]
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Revision as of 20:52, 6 March 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng
  • Peak finding DNASTAR Array Star 21/01/12
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

20 June 2013

+ N    00:45 User:Karmella Haynes/Notebook/PcTF Genomics/2013/06/19‎ (5 changes) . . (+1,931) . . (Page history) [Karmella Haynes‎ (5×)]

18 June 2013

+      22:44 User:Karmella Haynes/Notebook/PcTF Genomics/2013/06/18‎ (5 changes) . . (+1,074) . . (Page history) [Karmella Haynes‎ (5×)]


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