User:Karmella Haynes/Notebook/PcTF Genomics

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==Illumina ChIP-seq==
==Illumina ChIP-seq==
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* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11] -  
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* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
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*  
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* Fasta --> BAM files: Mark Teng
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* Peak finding DNASTAR Array Star [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/01 21/01/12]
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* Enrichment analysis (DNASTAR software)
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** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
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** BAM --> wig files for UCSC browser workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/01/07 01/07/2013]
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Revision as of 20:52, 6 March 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng
  • Peak finding DNASTAR Array Star 21/01/12
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

11 September 2014

+ N    17:18 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/11‎ (2 changes) . . (+1,588) . . (Page history) [Karmella Haynes‎ (2×)]

10 September 2014

+ N    16:00 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/10‎ (5 changes) . . (+2,450) . . (Page history) [Karmella Haynes‎ (5×)]
       15:28 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/09 (diff; hist) . .  (+185) . . Karmella Haynes (Talk | contribs) (09/09/14: )
       15:26 User:Karmella Haynes/Notebook/PcTF Genomics (diff; hist) . .  (+50) . . Karmella Haynes (Talk | contribs) (Cell Type Study: )


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