User:Karmella Haynes/Notebook/PcTF Genomics

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(Illumina ChIP-seq)
(Illumina ChIP-seq)
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* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
* Fasta --> BAM files: Mark Teng
* Fasta --> BAM files: Mark Teng
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* Peak finding DNASTAR Array Star [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/01 21/01/12]
* Enrichment analysis (DNASTAR software)
* Enrichment analysis (DNASTAR software)
 +
** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
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Revision as of 21:09, 7 January 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng
  • Peak finding DNASTAR Array Star 21/01/12
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012


Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

17 November 2014

+ N    14:53 User:Karmella Haynes/Notebook/PcTF Genomics/2014/11/16‎ (3 changes) . . (+1,486) . . (Page history) [Karmella Haynes‎ (3×)]

15 November 2014

+ N    15:08 User:Karmella Haynes/Notebook/PcTF Genomics/2014/11/15‎ (3 changes) . . (+1,700) . . (Page history) [Karmella Haynes‎ (3×)]


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