User:Karmella Haynes/Notebook/PcTF Genomics

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(Illumina ChIP-seq)
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==Project Description/Abstract==
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==Illumina ChIP-seq==
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* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
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* Fasta --> BAM files: Mark Teng
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* Enrichment analysis (DNASTAR software)
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** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
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Illumina ChIP-seq
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<br>
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* Map Pc-TF binding & map H3K27me3 in U2OS
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==Notes==
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==Cell Type Study==
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* Fingers crossed!
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* Express PcTF (KAH126) in K-562 and SK-N-SH

Revision as of 17:33, 26 December 2012

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012


Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

29 January 2015

+      12:46 User:Karmella Haynes/Notebook/PcTF Genomics/2015/01/28‎ (2 changes) . . (+130) . . (Page history) [Karmella Haynes‎ (2×)]

28 January 2015

+ N    18:34 User:Karmella Haynes/Notebook/PcTF Genomics/2015/01/28‎ (2 changes) . . (+2,412) . . (Page history) [Karmella Haynes‎ (2×)]
  N    18:23 User:Karmella Haynes/Notebook/PcTF Genomics/2015 (diff; hist) . .  (+779) . . Karmella Haynes (Talk | contribs) (Autocreate Year 2015 Entry for User:Karmella_Haynes/Notebook/PcTF_Genomics)
  N    18:23 User:Karmella Haynes/Notebook/PcTF Genomics/2015/01 (diff; hist) . .  (+201) . . Karmella Haynes (Talk | contribs) (Autocreate Month 2015/01 Entry for User:Karmella_Haynes/Notebook/PcTF_Genomics)


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