User:Karmella Haynes/Notebook/PcTF Genomics

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(Illumina ChIP-seq)
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==Project Description/Abstract==
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==Illumina ChIP-seq==
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* ChIP DNA prep for Illumina: [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11],  [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11]
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* Fasta --> BAM files: Mark Teng
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* Enrichment analysis (DNASTAR software)
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** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012]
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Illumina ChIP-seq
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<br>
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* Map Pc-TF binding & map H3K27me3 in U2OS
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==Notes==
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==Cell Type Study==
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* Fingers crossed!
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* Express PcTF (KAH126) in K-562 and SK-N-SH

Revision as of 18:33, 26 December 2012

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina: 12/13/11, 12/14/11, 12/19/11
  • Fasta --> BAM files: Mark Teng
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012


Cell Type Study

  • Express PcTF (KAH126) in K-562 and SK-N-SH


Recent changes

28 September 2014

+      10:16 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/24‎ (7 changes) . . (+1,035) . . (Page history) [Karmella Haynes‎ (7×)]
+ N    10:06 User:Karmella Haynes/Notebook/PcTF Genomics/2014/09/25‎ (3 changes) . . (+1,442) . . (Page history) [Karmella Haynes‎ (3×)]


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