User:Karmella Haynes/Notebook/PcTF Genomics

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(Illumina ChIP-seq)
(Cell Type Study)
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==Cell Type Study==
==Cell Type Study==
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* Express PcTF (KAH126) in K-562 and SK-N-SH
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* Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH

Revision as of 12:27, 19 April 2013

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina:
  • Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN)
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH


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