User:Karmella Haynes/Notebook/PcTF Genomics
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(→Illumina ChIP-seq) |
Current revision (13:27, 19 April 2013) (view source) (→Cell Type Study) |
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==Illumina ChIP-seq== | ==Illumina ChIP-seq== | ||
* ChIP DNA prep for Illumina: | * ChIP DNA prep for Illumina: | ||
| - | * | + | ** Experimental samples - [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/13 12/13/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/14 12/14/11], [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2011/12/19 12/19/11] |
| + | ** Input DNA - [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/01/25 01/25/13] | ||
| + | * Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN) | ||
| + | * Enrichment analysis (DNASTAR software) | ||
| + | ** BAM --> peaks/ enrichment histograms workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2012/12/13 12/13/2012] | ||
| + | ** BAM --> wig files for UCSC browser workflow [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/01/07 01/07/2013] | ||
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<br> | <br> | ||
==Cell Type Study== | ==Cell Type Study== | ||
| - | * Express PcTF (KAH126) in K-562 and SK-N-SH | + | * Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH |
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Illumina ChIP-seq
Cell Type Study
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