User:Karmella Haynes/Notebook/BioBrick cloning/Entry Base: Difference between revisions

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| <u>Ligation</u> || <font color="blue"><u>Plate results (lig : neg crtl)</u> mm/dd/yy</font>
| <u>Ligation</u> || <font color="blue"><u>Plate results (lig : neg crtl)</u> mm/dd/yy</font>
|-
|-
| 1. insert(a/b)/size, ## ng + vector(c/d)/size, ## ng || <font color="blue">new BioBrick x:y (Pick 2#)</font>
| 1. insert(a/b)/size, ## ng + vector(c/d)/size, ## ng || <font color="blue">new BioBrick x:y (Pick #)</font>
|-
|-
| 2. vector(c/d)/ ## ng || &nbsp;
| 2. vector(c/d)/ ## ng || &nbsp;
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{| class="wikitable" border="0" cellspacing="3" <!-- Ligantion rxn table -->
{| class="wikitable" border="0" cellspacing="3" <!-- Ligantion rxn table -->
| &nbsp; || 1 || 2 ||
| &nbsp;             || 1   || 2   ||
|-
|-
| Insert DNA        || ### || --- ||
| Insert DNA        || ### || --- ||
|-
|-
| Vector DNA        || ### || ### ||
| Vector DNA        || ### || ### ||
|-
|-
| 2x lgn buf (Roche) || ### || ### ||
| 2x lgn buf (Roche) || ### || ### ||
|-
|-
| T4 ligase (NEB)    || 1.0 || 1.0 ||
| T4 ligase (NEB)    || 1.0 || 1.0 ||
|-
|-
| dH<sub>2</sub>O    || ### || ### ||
| dH<sub>2</sub>O    || ### || ### ||
|-
|-
| &nbsp;            || # μL || # μL ||
| &nbsp;            || # μL || # μL ||

Revision as of 09:52, 26 November 2009

Project name <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page

mm/dd/yy

  • Line item 1
  • Line item 2

Minipreps
> Check with E/P digests

Reagent Volume Expected:
1. BB 1 = size
2. BB2 = size
DNA(plasmid) 2.0 μL
10X buffer 1.5
EcoRI 1.0
PstI 1.0
dH2O 9.5
  15 μL --> 37°C/ ~15 min.

Assemblies

  1. BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size
  2. BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size

> Digests (Fermentas FD)
--> Specific notes

Reagent Volume  
DNA (plasmid) up to 25 μL
10x buffer 3.0
enzyme 1 1.0
enzyme 2 1.0
dH2O ---
  30 μL --> 37°C/ ~30 min.


> Measure conc.'s

Sample OD260 260/280 ng/μL
1. Digested part (a/b) --- --- ---
2. Digested part (c/d) --- --- ---


> Dephosphorylation (Roche)

Reagent Volume
DNA (clean digest) up to 17 μL (500 ng)
10x buffer d.p. 2.0
phosphatase 1.0
dH2O ---
  20 μL --> 37°C/ 10 min.; 75°C/ 2 min.; [final] = 25 ng/μL


> Ligations

Ligation Plate results (lig : neg crtl) mm/dd/yy
1. insert(a/b)/size, ## ng + vector(c/d)/size, ## ng new BioBrick x:y (Pick #)
2. vector(c/d)/ ## ng  
  1 2
Insert DNA ### ---
Vector DNA ### ###
2x lgn buf (Roche) ### ###
T4 ligase (NEB) 1.0 1.0
dH2O ### ###
  # μL # μL

Oligo annealing

  1. New BB 1
  2. New BB 2
DNA (oligos, 100 μM) up to 18 μL (3 μL ea.)
10x annealing buffer 2.0
dH2O ---
  20 μL --> 100°C (water bath)/ 5 min.; Cool to R.T. overnight



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