User:Karmella Haynes/Notebook/BioBrick cloning/Entry Base: Difference between revisions
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{|{{table}} width="800" | {|{{table}} width="800" | ||
|- | |- | ||
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> | |style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;">Karmella's BioBrick Cloning</span> | ||
|style="background-color: #F2F2F2" align="center"| | |style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]] }}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}} | ||
|- | |- | ||
| colspan="2"| | | colspan="2"| | ||
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### --> | <!-- ##### DO NOT edit above this line unless you know what you are doing. ##### --> | ||
== | ==mm/dd/yy== | ||
* | <!-- Precede finished items with a checkmark ✓ --> | ||
* | * Line item 1 | ||
* Line item 2 | |||
---- | ---- | ||
''' | '''Line item''' | ||
{| | * Minipreps | ||
|-valign="top" | ** Sigma GenElute kit, elute w/ 75 μL elution sln. | ||
| | |||
* Digests | |||
** Check with #/# digests | |||
{| {{table}} border="1" cellspacing="3" <!-- Digest check rxn. table --> | |||
|- valign="top" | |||
| bgcolor=#cfcfcf | Reagent | |||
| bgcolor=#cfcfcf | Volume | |||
| rowspan="7" | <u>Expected:</u><br>1. BB 1 = size<br>2. BB2 = size<br> | | rowspan="7" | <u>Expected:</u><br>1. BB 1 = size<br>2. BB2 = size<br> | ||
| rowspan="7" | <!-- | | rowspan="7" | <!-- [[Image:GelImage.jpg|400px|Hover name]]<br>15 μL/lane; 1% agarose; [http://openwetware.org/wiki/Image:KAH_Fermentas_GeneRuler_1kbplus.jpg Ladder] --> | ||
|- | |- | ||
| DNA(plasmid) || 2.0 μL | | DNA(plasmid) || 2.0 μL | ||
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---- | ---- | ||
''' | '''Line item''' | ||
* Assemblies | |||
# BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size | # BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size | ||
# BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size | # BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size | ||
{| | * Digests (Fermentas FD) | ||
|- | ** Specific notes | ||
| | |||
{| {{table}} cellspacing="3" <!-- Digest rxn. table --> | |||
|- valign="top" | |||
| bgcolor=#cfcfcf | Reagent | |||
| bgcolor=#cfcfcf | Volume | |||
| rowspan="7" | <!-- [[Image:GelImage.jpg|270px|Hover name]]<br>30 μL/lane, 1% agarose; [http://openwetware.org/wiki/Image:KAH_Fermentas_GeneRuler_1kbplus.jpg Ladder] --> | |||
|- | |- | ||
| DNA (plasmid) || up to 25 μL | | DNA (plasmid) || up to 25 μL | ||
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* Measure conc.'s | |||
{| | {| {{table}} cellspacing="3" <!-- [DNA] table --> | ||
|- | |- bgcolor=#cfcfcf | ||
| | | Sample || OD260 || 260/280 || ng/μL | ||
|- | |- | ||
| 1. Digested part (a/b) || --- || --- || --- | | 1. Digested part (a/b) || --- || --- || --- | ||
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* Dephosphorylation (Roche) | |||
{| | {| {{table}} cellspacing="3" <!-- Dephos table --> | ||
|- | |- | ||
| | | bgcolor=#cfcfcf | Reagent | ||
| bgcolor=#cfcfcf | Volume | |||
|- | |- | ||
| DNA (clean digest) || up to 17 μL (500 ng) | | DNA (clean digest) || up to 17 μL (500 ng) | ||
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* Ligations | |||
# insert/(a/b)/size + vector/(c/d)/size | |||
# vector/(c/d)/size | |||
{| | {| {{table}} cellspacing="3" <!-- Ligation rxn table --> | ||
| | |- valign="top" | ||
| bgcolor=#cfcfcf | Reagent | |||
| bgcolor=#cfcfcf | Rxn1 | |||
| bgcolor=#cfcfcf | Rxn2 | |||
|- | |- | ||
| Insert DNA || ### || --- | | Insert DNA || ### || --- | ||
|- | |- | ||
| Vector DNA || ### || ### | | Vector DNA || ### || ### | ||
|- | |- | ||
| 2x lgn buf (Roche) || ### || ### | | 2x lgn buf (Roche) || ### || ### | ||
|- | |- | ||
| T4 ligase (NEB) || 1.0 || 1.0 | | T4 ligase (NEB) || 1.0 || 1.0 | ||
|- | |- | ||
| dH<sub>2</sub>O || ### || ### | | dH<sub>2</sub>O || ### || ### | ||
|- | |- | ||
| || # μL || # μL | | || # μL || # μL | ||
|} | |} | ||
Latest revision as of 17:56, 26 September 2017
Karmella's BioBrick Cloning | Main project page | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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