mm/dd/yy
- David Tze - minpreps & digests
- Ben - sequencing order
- Cas-tone - sequencing order
David Tze - minpreps & digests
- Minipreps
- Sigma GenElute kit, elute w/ 75 μL elution sln.
- Digests
- Check with E/S digests; cannot use PstI because PLrigid & PLrigid4 contain PstI sites
Reagent
|
Volume
|
Expected: 1. DT001 = size 2. DT002 = size 3. DT003 = size 4. DT004 = size Empty vectors = ~2600, ~400 - 600
|
15 μL/lane; 1% agarose; Ladder
|
DNA(plasmid) |
2.0 μL
|
10X buffer |
1.5
|
EcoRI |
1.0
|
SpeI |
1.0
|
dH2O |
9.5
|
|
15 μL --> 37°C/ ~15 min.
|
Sequencing orders
- DBN007_1 -
- BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size
- BioBrick name: 5' part/(a/b)/size + 3' part/(c/d)/size
Reagent
|
Volume
|
|
DNA (plasmid) |
up to 25 μL
|
10x buffer |
3.0
|
enzyme 1 |
1.0
|
enzyme 2 |
1.0
|
dH2O |
---
|
|
30 μL --> 37°C/ ~30 min.
|
Sample |
OD260 |
260/280 |
ng/μL
|
1. Digested part (a/b) |
--- |
--- |
---
|
2. Digested part (c/d) |
--- |
--- |
---
|
- Dephosphorylation (Roche)
Reagent
|
Volume
|
DNA (clean digest) |
up to 17 μL (500 ng)
|
10x buffer d.p. |
2.0
|
phosphatase |
1.0
|
dH2O |
---
|
|
20 μL --> 37°C/ 10 min.; 75°C/ 2 min.; [final] = 25 ng/μL
|
- insert/(a/b)/size + vector/(c/d)/size
- vector/(c/d)/size
Reagent
|
Rxn1
|
Rxn2
|
Insert DNA |
### |
---
|
Vector DNA |
### |
###
|
2x lgn buf (Roche) |
### |
###
|
T4 ligase (NEB) |
1.0 |
1.0
|
dH2O |
### |
###
|
|
# μL |
# μL
|
|