User:Karmella Haynes/Notebook/BioBrick cloning/2015/04/22: Difference between revisions
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Dilute the purified dsDNA to 30 fmol/μL (30 nM) | Dilute the purified dsDNA to 30 fmol/μL (30 nM) | ||
* Formula: x μL = length in bp ÷ measured ng/μL * 0.0195 ng/μL * 50μL | * Formula: x μL = length in bp ÷ measured ng/μL * 0.0195 ng/μL * 50μL | ||
** Gal4DB-mCh (1170 bp) = | |||
** ATF2 (906 bp) = | |||
** MV10 (5191 bp) = | |||
* Add x to dH<sub>2</sub>O, final vol. = 50 μL | * Add x to dH<sub>2</sub>O, final vol. = 50 μL | ||
* Use 1.0 μL of diluted dsDNA per 10 μL LCR reaction | * Use 1.0 μL of diluted dsDNA per 10 μL LCR reaction | ||
Prep the Oligo Bridges | |||
* Note: Final conc. in LCR rxn. is 30 nM each | |||
* Bring the IDT oligo pellet to 100μM with dH2O. nmoles oligo (on label) * 10 = μL H2O to add | |||
* Make a 300 nM working solution (final volume = 100 μL) in a new tube. 3 μL of 100μM oligo stock + 97 μL dH2O = 100 μL | |||
LCR Reactions (PCR fragments / oligo bridges) | |||
# Gal4DB-mCh, ATF2, MV10 / LCRb_MV10_Gal4DB_rc, LCRb_mCh_ATF2_rc, LCRb_ATF2_MV10_rc | |||
# Neg: MV10 / LCRb_MV10_Gal4DB_rc, LCRb_mCh_ATF2_rc, LCRb_ATF2_MV10_rc | |||
{| {{table}} cellspacing="3" | |||
|- bgcolor=#cfcfcf | |||
| Reagent || Rxn1 || Rxn2 (neg) | |||
|- | |||
| 30 nM DNA (3 nM) || 7.5 || 2.5 | |||
|- | |||
| 300 nM Oligo Bridges (30 nM) || 7.5 || 7.5 | |||
|- | |||
| 10X Ampligase Buffer || 2.5 || 2.5 | |||
|- | |||
| Ampligase || 1.0 || 1.0 | |||
|- | |||
| dH<sub>2</sub>O || 6.5 || 6.5 | |||
|- | |||
| || 25.0 | |||
|} | |||
Thermocycler: BioRad dual block | |||
* 94 °C, 2 min. | |||
* 50x[94°C, 10 sec; 55°C, 30 sec; 66°C, 60 sec | |||
* 4 °C, ∞ | |||
Transformation | |||
* Add to 60 μL DH5α-turbo; incubate 5 min/ice | |||
* Plate on 100 μg/mL amp | |||
* Grow at 37°C overnight | |||
Revision as of 16:22, 22 April 2015
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04/22/15
LCR - assembly attempt #1
LCR Reactions (PCR fragments / oligo bridges)
Thermocycler: BioRad dual block
Minipreps
Assemblies
Oligo annealing
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