User:Karmella Haynes/Notebook/BioBrick cloning/2015/04/17: Difference between revisions

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Program: Phusion (block B)
Program: Phusion (block B)
* 98°C, 3 min
* 98°C, 3 min
* 35x[98°C, 10 sec; 66°C, 30 sec; 72°C, ?? sec]
* 35x[98°C, 10 sec; 66°C, 30 sec; 72°C, 60 sec]
* 72°C, 10 min
* 72°C, 10 min
* 4°C ∞
* 4°C ∞

Revision as of 10:51, 20 April 2015

Karmella's BioBrick Cloning <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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04/16/15

  • Rene - gRNA plasmids, 5 mL cultures (11 total)
  • Ryan - Receiver plasmids, assembly
  • LCR Development - Repeat Phusion for MV10, use correct amount of 5x buffer


Ryan - Receiver plasmids, assembly

  • Stage 1 - insert Regulator ORFS
    • Phusion PCR-amplify ORFs (add 5'-E, 3'-X cut sites)
    • Insert ORF(E/X) into Vector (#/#). see Vector plasmid map
  • Stage 2 - insert Promoters
    • Cut & dephos promoters with E/X
    • Insert promoters(E/X) into Vector/Regulator (BbsI) via Lig/Dig cycling


Phusion PCR

  1. AubR, EcoRI F/ XbaI R
  2. BjaR, "
  3. BraR, "
  4. RpaR, "
Reagent Volume Mix (x5) Expected:
1. BB 1 = size
2. BB2 = size
DNA(plasmid) 0.5 μL ---
10 μM F primer 1.0 5.0
10 μM R primer 1.0 5.0
10 mM dNTPs 1.0 5.0
Phusion Pol. 0.5 2.5
5X HF buffer 10.0 50.0
dH2O 36.0 180.0
  50.0


Program: Phusion (block B)

  • 98°C, 3 min
  • 35x[98°C, 10 sec; 66°C, 30 sec; 72°C, 60 sec]
  • 72°C, 10 min
  • 4°C ∞

Conclusion

  • tba


LCR Development

  • Repeat Phusion for MV10 (from 4/16/15), use correct amount of 5x buffer


Phusion PCR

Reagent Rxn1,2 Expected:
1. BB 1 = size
2. BB2 = size
DNA(clean linear) 1.0 μL
10 μM F primer 1.0
10 μM R primer 1.0
10 mM dNTPs 1.0
Phusion Pol. 0.5
5X HF buffer 10.0
dH2O 35.5
  50.0


Program: Phusion (block A)

  • 98°C, 3 min
  • 35x[98°C, 10 sec; 60°C, 30 sec; 72°C, 2.5 min]
  • 72°C, 10 min
  • 4°C ∞

Conclusion

  • tba



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